Literature DB >> 11420440

Elongation of the BH8 beta-hairpin peptide: Electrostatic interactions in beta-hairpin formation and stability.

M Ramírez-Alvarado1, F J Blanco, L Serrano.   

Abstract

An elongated version of the de novo designed beta-hairpin peptide, BH8, has allowed us to gain insight into the role of electrostatic interactions in beta-hairpin stability. A Lys-Glu electrostatic pair has been introduced by adding a residue at the beginning and at the end of the N-terminal and C-terminal strands, respectively, of the beta-hairpin structure, in both orientations. The two resulting peptides and controls having Ala residues at these positions and different combinations of Ala with Lys, or Glu residues, have been analyzed by nuclear magnetic resonance (NMR), under different pH and ionic strength conditions. All of the NMR parameters, in particular the conformational shift analysis of Calpha protons and the coupling constants, (3)J(HNalpha), correlate well and the population estimates are in reasonable agreement among the different methods used. In the most structured peptides, we find an extension of the beta-hairpin structure comprising the two extra residues. Analysis of the pH and salt dependence shows that ionic pairs contribute to beta-hairpin stability. The interaction is electrostatic in nature and can be screened by salt. There is also an important salt-independent contribution of negatively charged groups to the stability of this family of beta-hairpin peptides.

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Year:  2001        PMID: 11420440      PMCID: PMC2374104          DOI: 10.1110/ps.52901

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  Studies of synthetic helical peptides using circular dichroism and nuclear magnetic resonance.

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Authors:  A M Gronenborn; D R Filpula; N Z Essig; A Achari; M Whitlow; P T Wingfield; G M Clore
Journal:  Science       Date:  1991-08-09       Impact factor: 47.728

5.  Calculation of protein extinction coefficients from amino acid sequence data.

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Journal:  Anal Biochem       Date:  1989-11-01       Impact factor: 3.365

6.  Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering.

Authors:  B L Sibanda; T L Blundell; J M Thornton
Journal:  J Mol Biol       Date:  1989-04-20       Impact factor: 5.469

7.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

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Authors:  F J Blanco; M A Jiménez; A Pineda; M Rico; J Santoro; J L Nieto
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

9.  Measurement of the beta-sheet-forming propensities of amino acids.

Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

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Authors:  K Osapay; D A Case
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

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  13 in total

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Review 2.  Combinatorial chemistry of beta-hairpins.

Authors:  M Teresa Pastor; Enrique Pérez-Payá
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

3.  Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

Authors:  Christopher D Snow; Linlin Qiu; Deguo Du; Feng Gai; Stephen J Hagen; Vijay S Pande
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4.  Optimal salt bridge for Trp-cage stabilization.

Authors:  D Victoria Williams; Aimee Byrne; James Stewart; Niels H Andersen
Journal:  Biochemistry       Date:  2011-02-01       Impact factor: 3.162

5.  Minimization and optimization of designed beta-hairpin folds.

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Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

6.  Terminal sidechain packing of a designed beta-hairpin influences conformation and stability.

Authors:  Lisa Eidenschink; Edward Crabbe; Niels H Andersen
Journal:  Biopolymers       Date:  2009-07       Impact factor: 2.505

7.  Probing the lower size limit for protein-like fold stability: ten-residue microproteins with specific, rigid structures in water.

Authors:  Brandon L Kier; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2008-10-09       Impact factor: 15.419

Review 8.  beta-hairpin-forming peptides; models of early stages of protein folding.

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Journal:  Biophys Chem       Date:  2010-05-06       Impact factor: 2.352

9.  Sequence dependence of beta-hairpin structure: comparison of a salt bridge and an aromatic interaction.

Authors:  Sarah E Kiehna; Marcey L Waters
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

10.  Factors involved in the stability of isolated beta-sheets: Turn sequence, beta-sheet twisting, and hydrophobic surface burial.

Authors:  Clara M Santiveri; Jorge Santoro; Manuel Rico; M Angeles Jiménez
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

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