Literature DB >> 11416182

Spatial and temporal control of RNA stability.

A Bashirullah1, R L Cooperstock, H D Lipshitz.   

Abstract

Maternally encoded RNAs and proteins program the early development of all animals. A subset of the maternal transcripts is eliminated from the embryo before the midblastula transition. In certain cases, transcripts are protected from degradation in a subregion of the embryonic cytoplasm, thus resulting in transcript localization. Maternal factors are sufficient for both the degradation and protection components of transcript localization. Cis-acting elements in the RNAs convert transcripts progressively (i) from inherently stable to unstable and (ii) from uniformly degraded to locally protected. Similar mechanisms are likely to act later in development to restrict certain classes of transcripts to particular cell types within somatic cell lineages. Functions of transcript degradation and protection are discussed.

Mesh:

Substances:

Year:  2001        PMID: 11416182      PMCID: PMC34617          DOI: 10.1073/pnas.111145698

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Joint action of two RNA degradation pathways controls the timing of maternal transcript elimination at the midblastula transition in Drosophila melanogaster.

Authors:  A Bashirullah; S R Halsell; R L Cooperstock; M Kloc; A Karaiskakis; W W Fisher; W Fu; J K Hamilton; L D Etkin; H D Lipshitz
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

Review 2.  Mechanisms of RNA localization and translational regulation.

Authors:  H D Lipshitz; C A Smibert
Journal:  Curr Opin Genet Dev       Date:  2000-10       Impact factor: 5.578

3.  Dynamic Hsp83 RNA localization during Drosophila oogenesis and embryogenesis.

Authors:  D Ding; S M Parkhurst; S R Halsell; H D Lipshitz
Journal:  Mol Cell Biol       Date:  1993-06       Impact factor: 4.272

4.  A Drosophila complementary DNA resource.

Authors:  G M Rubin; L Hong; P Brokstein; M Evans-Holm; E Frise; M Stapleton; D A Harvey
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

5.  Comparative genomics of the eukaryotes.

Authors:  G M Rubin; M D Yandell; J R Wortman; G L Gabor Miklos; C R Nelson; I K Hariharan; M E Fortini; P W Li; R Apweiler; W Fleischmann; J M Cherry; S Henikoff; M P Skupski; S Misra; M Ashburner; E Birney; M S Boguski; T Brody; P Brokstein; S E Celniker; S A Chervitz; D Coates; A Cravchik; A Gabrielian; R F Galle; W M Gelbart; R A George; L S Goldstein; F Gong; P Guan; N L Harris; B A Hay; R A Hoskins; J Li; Z Li; R O Hynes; S J Jones; P M Kuehl; B Lemaitre; J T Littleton; D K Morrison; C Mungall; P H O'Farrell; O K Pickeral; C Shue; L B Vosshall; J Zhang; Q Zhao; X H Zheng; S Lewis
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

6.  Appearance and persistence of maternal RNA sequences in sea urchin development.

Authors:  B R Hough-Evans; B J Wold; S G Ernst; R J Britten; E H Davidson
Journal:  Dev Biol       Date:  1977-10-01       Impact factor: 3.582

7.  Genetic information in oocyte RNA.

Authors:  E H Davidson; B R Hough
Journal:  J Mol Biol       Date:  1971-03-28       Impact factor: 5.469

8.  Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution.

Authors:  S M Beverley; A C Wilson
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

9.  Complexity of RNA in eggs of Drosophila melanogaster and Musca domestica.

Authors:  B R Hough-Evans; M Jacobs-Lorena; M R Cummings; R J Britten; E H Davidson
Journal:  Genetics       Date:  1980-05       Impact factor: 4.562

10.  The genome sequence of Drosophila melanogaster.

Authors:  M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; M Ashburner; S N Henderson; G G Sutton; J R Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; J F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; J Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; E Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; D Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; G H Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; P Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; S M Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; D R Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; A C Spradling; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; H O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

View more
  77 in total

Review 1.  A cellular mechanism for targeting newly synthesized mRNAs to synaptic sites on dendrites.

Authors:  O Steward; P F Worley
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

2.  Efficient trans-cleavage by the Schistosoma mansoni SMalpha1 hammerhead ribozyme in the extreme thermophile Thermus thermophilus.

Authors:  Alejandro Vazquez-Tello; Pablo Castán; Renata Moreno; James M Smith; José Berenguer; Robert Cedergren
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

3.  Organizing the oocyte: RNA localization meets phase separation.

Authors:  Sarah E Cabral; Kimberly L Mowry
Journal:  Curr Top Dev Biol       Date:  2020-03-09       Impact factor: 4.897

4.  Coupled amplification and degradation of exogenous RNA injected in amphibian oocytes.

Authors:  Nicole Montreau; Sabine Vaur; Francois Dautry; Yannick Andéol
Journal:  Nucleic Acids Res       Date:  2004-05-25       Impact factor: 16.971

5.  Detection and evaluation of intron retention events in the human transcriptome.

Authors:  Pedro Alexandre Favoretto Galante; Noboru Jo Sakabe; Natanja Kirschbaum-Slager; Sandro José de Souza
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

Review 6.  Control of cytoplasmic mRNA localization.

Authors:  Karen Shahbabian; Pascal Chartrand
Journal:  Cell Mol Life Sci       Date:  2011-10-08       Impact factor: 9.261

7.  Use of chromosome walking in discovery of single-nucleotide polymorphism in noncoding regions of a candidate actin gene in Pinus radiata.

Authors:  W Li; H Li; H Wu; X-Y Chen
Journal:  J Appl Genet       Date:  2010       Impact factor: 3.240

8.  From ORFeome to biology: a functional genomics pipeline.

Authors:  Stefan Wiemann; Dorit Arlt; Wolfgang Huber; Ruth Wellenreuther; Simone Schleeger; Alexander Mehrle; Stephanie Bechtel; Mamatha Sauermann; Ulrike Korf; Rainer Pepperkok; Holger Sültmann; Annemarie Poustka
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

Review 9.  Mechanisms and consequences of subcellular RNA localization across diverse cell types.

Authors:  Krysta L Engel; Ankita Arora; Raeann Goering; Hei-Yong G Lo; J Matthew Taliaferro
Journal:  Traffic       Date:  2020-04-29       Impact factor: 6.215

Review 10.  mRNA localization: gene expression in the spatial dimension.

Authors:  Kelsey C Martin; Anne Ephrussi
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.