Literature DB >> 10731134

Comparative genomics of the eukaryotes.

G M Rubin1, M D Yandell, J R Wortman, G L Gabor Miklos, C R Nelson, I K Hariharan, M E Fortini, P W Li, R Apweiler, W Fleischmann, J M Cherry, S Henikoff, M P Skupski, S Misra, M Ashburner, E Birney, M S Boguski, T Brody, P Brokstein, S E Celniker, S A Chervitz, D Coates, A Cravchik, A Gabrielian, R F Galle, W M Gelbart, R A George, L S Goldstein, F Gong, P Guan, N L Harris, B A Hay, R A Hoskins, J Li, Z Li, R O Hynes, S J Jones, P M Kuehl, B Lemaitre, J T Littleton, D K Morrison, C Mungall, P H O'Farrell, O K Pickeral, C Shue, L B Vosshall, J Zhang, Q Zhao, X H Zheng, S Lewis.   

Abstract

A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae-and the proteins they are predicted to encode-was undertaken in the context of cellular, developmental, and evolutionary processes. The nonredundant protein sets of flies and worms are similar in size and are only twice that of yeast, but different gene families are expanded in each genome, and the multidomain proteins and signaling pathways of the fly and worm are far more complex than those of yeast. The fly has orthologs to 177 of the 289 human disease genes examined and provides the foundation for rapid analysis of some of the basic processes involved in human disease.

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Year:  2000        PMID: 10731134      PMCID: PMC2754258          DOI: 10.1126/science.287.5461.2204

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  79 in total

Review 1.  Extracellular modulation of the Hedgehog, Wnt and TGF-beta signalling pathways during embryonic development.

Authors:  J Capdevila; J C lzpisúa Belmonte
Journal:  Curr Opin Genet Dev       Date:  1999-08       Impact factor: 5.578

2.  Increased coverage of protein families with the blocks database servers.

Authors:  J G Henikoff; E A Greene; S Pietrokovski; S Henikoff
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Three-dimensional reconstruction of the antennal lobe in Drosophila melanogaster.

Authors:  P P Laissue; C Reiter; P R Hiesinger; S Halter; K F Fischbach; R F Stocker
Journal:  J Comp Neurol       Date:  1999-03-22       Impact factor: 3.215

4.  Induction of apoptotic program in cell-free extracts: requirement for dATP and cytochrome c.

Authors:  X Liu; C N Kim; J Yang; R Jemmerson; X Wang
Journal:  Cell       Date:  1996-07-12       Impact factor: 41.582

5.  Vertebrate evolution by interspecific hybridisation--are we polyploid?

Authors:  J Spring
Journal:  FEBS Lett       Date:  1997-01-02       Impact factor: 4.124

6.  Serotonin synchronises convergent extension of ectoderm with morphogenetic gastrulation movements in Drosophila.

Authors:  J F Colas; J M Launay; J L Vonesch; P Hickel; L Maroteaux
Journal:  Mech Dev       Date:  1999-09       Impact factor: 1.882

7.  Rescue of embryonic lethality in Mdm2-deficient mice by absence of p53.

Authors:  S N Jones; A E Roe; L A Donehower; A Bradley
Journal:  Nature       Date:  1995-11-09       Impact factor: 49.962

8.  dE2F2, a novel E2F-family transcription factor in Drosophila melanogaster.

Authors:  T Sawado; M Yamaguchi; Y Nishimoto; K Ohno; K Sakaguchi; A Matsukage
Journal:  Biochem Biophys Res Commun       Date:  1998-10-20       Impact factor: 3.575

9.  The UNI3 gene is required for assembly of basal bodies of Chlamydomonas and encodes delta-tubulin, a new member of the tubulin superfamily.

Authors:  S K Dutcher; E C Trabuco
Journal:  Mol Biol Cell       Date:  1998-06       Impact factor: 4.138

Review 10.  The taxonomy of developmental control in Caenorhabditis elegans.

Authors:  G Ruvkun; O Hobert
Journal:  Science       Date:  1998-12-11       Impact factor: 47.728

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  486 in total

1.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Authors:  R Apweiler; M Biswas; W Fleischmann; A Kanapin; Y Karavidopoulou; P Kersey; E V Kriventseva; V Mittard; N Mulder; I Phan; E Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 3.  The biology of the mammalian Krüppel-like family of transcription factors.

Authors:  D T Dang; J Pevsner; V W Yang
Journal:  Int J Biochem Cell Biol       Date:  2000 Nov-Dec       Impact factor: 5.085

4.  The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster.

Authors:  A Takahashi; S C Tsaur; J A Coyne; C I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

5.  Light, flies and cell division. Workshop: regulation of cell division in Drosophila.

Authors:  C Gonzalez; M Bornens
Journal:  EMBO Rep       Date:  2000-11       Impact factor: 8.807

6.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

7.  Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii.

Authors:  R M Story; H Li; J N Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

8.  RNA: a method to specifically inhibit PCR amplification of known members of a multigene family by degenerate primers.

Authors:  P S Yuen; K M Brooks; Y Li
Journal:  Nucleic Acids Res       Date:  2001-03-15       Impact factor: 16.971

9.  Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins.

Authors:  S N Prokopenko; Y He; Y Lu; H J Bellen
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

Review 10.  The evolution of cell adhesion.

Authors:  R O Hynes; Q Zhao
Journal:  J Cell Biol       Date:  2000-07-24       Impact factor: 10.539

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