Literature DB >> 11416174

DNA structure from A to B.

R E Dickerson1, H L Ng.   

Abstract

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Year:  2001        PMID： 11416174      PMCID： PMC34608          DOI： 10.1073/pnas.141238898

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  11 in total

1.  A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC).

Authors:  R Stefl; L Trantírek; M Vorlícková; J Koca; V Sklenár; J Kypr
Journal:  J Mol Biol       Date:  2001-03-23       Impact factor: 5.469

2.  The structure of a stable intermediate in the A <--> B DNA helix transition.

Authors:  H L Ng; M L Kopka; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

3.  A crystallographic map of the transition from B-DNA to A-DNA.

Authors:  J M Vargason; K Henderson; P S Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

4.  The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.

Authors:  J M Vargason; B F Eichman; P S Ho
Journal:  Nat Struct Biol       Date:  2000-09

5.  DNA bending: the prevalence of kinkiness and the virtues of normality.

Authors:  R E Dickerson
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

6.  An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

Authors:  L Trantírek; R Stefl; M Vorlícková; J Koca; V Sklenár; J Kypr
Journal:  J Mol Biol       Date:  2000-04-07       Impact factor: 5.469

7.  A base-centred explanation of the B-to-A transition in DNA.

Authors:  C R Calladine; H R Drew
Journal:  J Mol Biol       Date:  1984-09-25       Impact factor: 5.469

8.  Sequence-dependent conformation of an A-DNA double helix. The crystal structure of the octamer d(G-G-T-A-T-A-C-C).

Authors:  Z Shakked; D Rabinovich; O Kennard; W B Cruse; S A Salisbury; M A Viswamitra
Journal:  J Mol Biol       Date:  1983-05-15       Impact factor: 5.469

9.  Crystal structure analysis of a complete turn of B-DNA.

Authors:  R Wing; H Drew; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Journal:  Nature       Date:  1980-10-23       Impact factor: 49.962

10.  Helix bending as a factor in protein/DNA recognition.

Authors:  R E Dickerson; T K Chiu
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505
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  23 in total

1.  3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

2.  Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.

Authors:  Ho-Leung Ng; Richard E Dickerson
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

3.  Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers.

Authors:  Alberto Pérez; Iván Marchán; Daniel Svozil; Jiri Sponer; Thomas E Cheatham; Charles A Laughton; Modesto Orozco
Journal:  Biophys J       Date:  2007-03-09       Impact factor: 4.033

4.  Microdosimetry of DNA conformations: relation between direct effect of (60)Co gamma rays and topology of DNA geometrical models in the calculation of A-, B- and Z-DNA radiation-induced damage yields.

Authors:  Farid Semsarha; Gholamreza Raisali; Bahram Goliaei; Hossein Khalafi
Journal:  Radiat Environ Biophys       Date:  2016-03-16       Impact factor: 1.925

5.  The B- to A-DNA transition and the reorganization of solvent at the DNA surface.

Authors:  Nina Pastor
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

6.  Dynamics of the B-A transition of DNA double helices.

Authors:  Davis Jose; Dietmar Porschke
Journal:  Nucleic Acids Res       Date:  2004-04-23       Impact factor: 16.971

7.  Free energy landscape and transition pathways from Watson-Crick to Hoogsteen base pairing in free duplex DNA.

Authors:  Changwon Yang; Eunae Kim; Youngshang Pak
Journal:  Nucleic Acids Res       Date:  2015-08-06       Impact factor: 16.971

8.  Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes.

Authors:  Gregory E Sims; Sung-Hou Kim
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

9.  Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view.

Authors:  Yongping Pan; Ruth Nussinov
Journal:  PLoS Comput Biol       Date:  2009-07-24       Impact factor: 4.475

10.  Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs.

Authors:  Arvind Marathe; Deepti Karandur; Manju Bansal
Journal:  BMC Struct Biol       Date:  2009-04-24
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