Literature DB >> 11369865

Overcoming the problems associated with poor spectra quality of the protein kinase Byr2 using residual dipolar couplings.

W Gronwald1, E Brunner, F Huber, M Wenzler, C Herrmann, H R Kalbitzer.   

Abstract

For the Ras-binding domain of the protein kinase Byr2, only a limited number of NOE contacts could be initially assigned unambiguously, as the quality of the NOESY spectra was too poor. However, the use of residual (1)H-(15)N dipolar couplings in the beginning of the structure determination process allows to overcome this problem. We used a three-step recipe for this procedure. A previously unknown structure could be calculated reasonably well with only a limited number of unambiguously assigned NOE contacts.

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Year:  2001        PMID: 11369865      PMCID: PMC2374016          DOI: 10.1110/ps.43201

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  13 in total

1.  Sequential NMR assignment of the RAS-binding domain of Byr2.

Authors:  F Huber; W Gronwald; S Wohlgemuth; C Herrmann; M Geyer; A Wittinghofer; H R Kalbitzer
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

2.  Structure determination of the Ras-binding domain of the Ral-specific guanine nucleotide exchange factor Rlf.

Authors:  D Esser; B Bauer; R M Wolthuis; A Wittinghofer; R H Cool; P Bayer
Journal:  Biochemistry       Date:  1998-09-29       Impact factor: 3.162

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.

Authors:  T Terada; Y Ito; M Shirouzu; M Tateno; K Hashimoto; T Kigawa; T Ebisuzaki; K Takio; T Shibata; S Yokoyama; B O Smith; E D Laue; J A Cooper
Journal:  J Mol Biol       Date:  1999-02-12       Impact factor: 5.469

5.  Relax, a flexible program for the back calculation of NOESY spectra based on complete-relaxation-matrix formalism.

Authors:  A Görler; H R Kalbitzer
Journal:  J Magn Reson       Date:  1997-01       Impact factor: 2.229

6.  Structure of the Ras-binding domain of RalGEF and implications for Ras binding and signalling.

Authors:  M Geyer; C Herrmann; S Wohlgemuth; A Wittinghofer; H R Kalbitzer
Journal:  Nat Struct Biol       Date:  1997-09

Review 7.  ras genes.

Authors:  M Barbacid
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

8.  Constrained multiple sequence alignment using XALIGN.

Authors:  D S Wishart; R F Boyko; B D Sykes
Journal:  Comput Appl Biosci       Date:  1994-12

9.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.

Authors:  N Tjandra; A Bax
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

10.  Characterization of magnetically oriented phospholipid micelles for measurement of dipolar couplings in macromolecules.

Authors:  M Ottiger; A Bax
Journal:  J Biomol NMR       Date:  1998-10       Impact factor: 2.835

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