Literature DB >> 11344263

Diffractive optics-based heterodyne-detected four-wave mixing signals of protein motion: from "protein quakes" to ligand escape for myoglobin.

G Dadusc1, J P Ogilvie, P Schulenberg, U Marvet, R J Miller.   

Abstract

Ligand transport through myoglobin (Mb) has been observed by using optically heterodyne-detected transient grating spectroscopy. Experimental implementation using diffractive optics has provided unprecedented sensitivity for the study of protein motions by enabling the passive phase locking of the four beams that constitute the experiment, and an unambiguous separation of the Real and Imaginary parts of the signal. Ligand photodissociation of carboxymyoglobin (MbCO) induces a sequence of events involving the relaxation of the protein structure to accommodate ligand escape. These motions show up in the Real part of the signal. The ligand (CO) transport process involves an initial, small amplitude, change in volume, reflecting the transit time of the ligand through the protein, followed by a significantly larger volume change with ligand escape to the surrounding water. The latter process is well described by a single exponential process of 725 +/- 15 ns. at room temperature. The overall dynamics provide a distinctive signature that can be understood in the context of segmental protein fluctuations that aid ligand escape via a few specific cavities, and they suggest the existence of discrete escape pathways.

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Year:  2001        PMID: 11344263      PMCID: PMC33430          DOI: 10.1073/pnas.101130298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

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Authors:  L Richard; L Genberg; J Deak; H L Chiu; R J Miller
Journal:  Biochemistry       Date:  1992-11-10       Impact factor: 3.162

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Authors:  J A Westrick; K S Peters
Journal:  Biophys Chem       Date:  1990-08-31       Impact factor: 2.352

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Authors:  H Frauenfelder; B McMahon
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

4.  Ligand migration in sperm whale myoglobin.

Authors:  E E Scott; Q H Gibson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

5.  The role of cavities in protein dynamics: crystal structure of a photolytic intermediate of a mutant myoglobin.

Authors:  M Brunori; B Vallone; F Cutruzzola; C Travaglini-Allocatelli; J Berendzen; K Chu; R M Sweet; I Schlichting
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

6.  Ligand binding to heme proteins: relevance of low-temperature data.

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Journal:  Biochemistry       Date:  1986-06-03       Impact factor: 3.162

7.  Protein states and proteinquakes.

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Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Stereochemistry of cooperative effects in haemoglobin.

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Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

Review 9.  Time-resolved optical spectroscopy and structural dynamics following photodissociation of carbonmonoxyhemoglobin.

Authors:  L P Murray; J Hofrichter; E R Henry; W A Eaton
Journal:  Biophys Chem       Date:  1988-02       Impact factor: 2.352

10.  Conformational relaxation and ligand binding in myoglobin.

Authors:  A Ansari; C M Jones; E R Henry; J Hofrichter; W A Eaton
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

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  11 in total

1.  Volume and enthalpy profiles of CO rebinding to horse heart myoglobin.

Authors:  Jaroslava Miksovská; Jason H Day; Randy W Larsen
Journal:  J Biol Inorg Chem       Date:  2003-05-06       Impact factor: 3.358

Review 2.  Myoglobin: the hydrogen atom of biology and a paradigm of complexity.

Authors:  H Frauenfelder; B H McMahon; P W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-14       Impact factor: 11.205

3.  Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Authors:  Hyun Sun Cho; Naranbaatar Dashdorj; Friedrich Schotte; Timothy Graber; Robert Henning; Philip Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-06       Impact factor: 11.205

4.  Direct observation of myoglobin structural dynamics from 100 picoseconds to 1 microsecond with picosecond X-ray solution scattering.

Authors:  Kyung Hwan Kim; Key Young Oang; Jeongho Kim; Jae Hyuk Lee; Youngmin Kim; Hyotcherl Ihee
Journal:  Chem Commun (Camb)       Date:  2010-08-24       Impact factor: 6.222

5.  Protein collective motions coupled to ligand migration in myoglobin.

Authors:  Yasutaka Nishihara; Shigeki Kato; Shigehiko Hayashi
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

6.  Carbon monoxide binding properties of domain-swapped dimeric myoglobin.

Authors:  Satoshi Nagao; Haruto Ishikawa; Takuya Yamada; Yasuhisa Mizutani; Shun Hirota
Journal:  J Biol Inorg Chem       Date:  2015-01-13       Impact factor: 3.358

7.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

8.  Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin.

Authors:  Jory Z Ruscio; Deept Kumar; Maulik Shukla; Michael G Prisant; T M Murali; Alexey V Onufriev
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-01       Impact factor: 11.205

9.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

10.  Entropic stabilization of myoglobin by subdenaturing concentrations of guanidine hydrochloride.

Authors:  Rajesh Kumar; Abani K Bhuyan
Journal:  J Biol Inorg Chem       Date:  2008-08-28       Impact factor: 3.358

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