Literature DB >> 11342713

Do domain interactions of glycosyl hydrolases from Clostridium thermocellum contribute to protein thermostability?

I A Kataeva1, D L Blum, X L Li, L G Ljungdahl.   

Abstract

Cellulolytic and hemicellulolytic enzymes usually have a domain composition. The mutual influence of a cellulose-binding domain and a catalytic domain was investigated with cellobiohydrolase CelK and xylanase XynZ from Clostridium thermocellum. CelK is composed of an N-terminal family IV cellulose-binding domain (CBDIV(CelK)), a family 9 glycosyl hydrolase domain (Gh9(CelK)) and a dockerin domain (DD). CelK without the DD, (CBDIV-Gh9)(CelK) and CBDIV(CelK) bound cellulose. The thermostability of (CBDIV-Gh9)(CelK) was significantly higher than that of CBDIV(CelK) and Gh9(CelK). The temperature optima of (CBDIV-Gh9)(CelK) and Gh9(CelK) were 65 and 45 degrees C, respectively. XynZ consists of an N-terminal feruloyl esterase domain (FAE(XynZ)), a linker (L), a family VI CBD (CBDVI(XynZ)), a DD and a xylanase domain. FAE(XynZ) and (FAE-L-CBDVI)(XynZ), used in the present study did not bind cellulose, but both were highly thermostable. Replacement of CBDVI(XynZ) with CBDIV(CelK) resulted in chimeras with feruloyl esterase activity and the ability to bind cellulose. CBDIV(CelK)-FAE(XynZ) bound cellulose with parameters similar to that of (CBDIV-Gh9)(CelK). (FAE-L)(XynZ)-CBDIV(CelK) and FAE(XynZ)-CBDIV(CelK) had lower relative affinities and binding capacities than those of (CBDIV-Gh9)(CelK). The three chimeras were much less thermostable than FAE(XynZ) and (FAE-L-CBDVI)(XynZ). The results indicate that domains of glycosyl hydrolases are not randomly combined and that domain interactions affect properties of these domain-structured enzymes.

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Year:  2001        PMID: 11342713     DOI: 10.1093/protein/14.3.167

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  12 in total

1.  Characterization of a cellulase containing a family 30 carbohydrate-binding module (CBM) derived from Clostridium thermocellum CelJ: importance of the CBM to cellulose hydrolysis.

Authors:  Takamitsu Arai; Rie Araki; Akiyoshi Tanaka; Shuichi Karita; Tetsuya Kimura; Kazuo Sakka; Kunio Ohmiya
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

2.  Fusion of carbohydrate binding modules from Thermotoga neapolitana with a family 10 xylanase from Bacillus halodurans S7.

Authors:  Gashaw Mamo; Rajni Hatti-Kaul; Bo Mattiasson
Journal:  Extremophiles       Date:  2006-09-28       Impact factor: 2.395

3.  Extending the cellulosome paradigm: the modular Clostridium thermocellum cellulosomal serpin PinA is a broad-spectrum inhibitor of subtilisin-like proteases.

Authors:  Páraic O Cuív; Rajesh Gupta; Hareshwar P Goswami; Mark Morrison
Journal:  Appl Environ Microbiol       Date:  2013-07-19       Impact factor: 4.792

Review 4.  Thermostable enzymes as biocatalysts in the biofuel industry.

Authors:  Carl J Yeoman; Yejun Han; Dylan Dodd; Charles M Schroeder; Roderick I Mackie; Isaac K O Cann
Journal:  Adv Appl Microbiol       Date:  2010-03-06       Impact factor: 5.086

Review 5.  Multifactorial level of extremostability of proteins: can they be exploited for protein engineering?

Authors:  Debamitra Chakravorty; Mohd Faheem Khan; Sanjukta Patra
Journal:  Extremophiles       Date:  2017-03-10       Impact factor: 2.395

6.  Enhanced cellulose degradation by targeted integration of a cohesin-fused β-glucosidase into the Clostridium thermocellum cellulosome.

Authors:  Gilad Gefen; Michael Anbar; Ely Morag; Raphael Lamed; Edward A Bayer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

7.  Calcium and domain interactions contribute to the thermostability of domains of the multimodular cellobiohydrolase, CbhA, a subunit of the Clostridium thermocellum cellulosome.

Authors:  Irina A Kataeva; Vladimir N Uversky; Lars G Ljungdahl
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

8.  The fibronectin type 3-like repeat from the Clostridium thermocellum cellobiohydrolase CbhA promotes hydrolysis of cellulose by modifying its surface.

Authors:  Irina A Kataeva; Ronald D Seidel; Ashit Shah; Larry T West; Xin-Liang Li; Lars G Ljungdahl
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

9.  Deleting the Ig-Like Domain of Alicyclobacillus acidocaldarius Endoglucanase Cel9A Causes a Simultaneous Increase in the Activity and Stability.

Authors:  Fereshteh S Younesi; Mohammad Pazhang; Saeed Najavand; Parastou Rahimizadeh; Mohsen Akbarian; Mehdi Mohammadian; Khosro Khajeh
Journal:  Mol Biotechnol       Date:  2016-01       Impact factor: 2.695

10.  The role of electrostatic interactions on klentaq1 insight for domain separation.

Authors:  Santi Nurbaiti; Muhamad A Martoprawiro; Rukman Hertadi
Journal:  Bioinform Biol Insights       Date:  2012-10-30
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