Literature DB >> 11340052

Mass spectrometry as a tool for protein crystallography.

S L Cohen1, B T Chait.   

Abstract

Atomic resolution structure determinations of proteins by X-ray crystallography are formidable multidisciplinary undertakings, requiring protein construct design, expression and purification, crystallization trials, phase determination, and model building. Modern mass spectrometric methods can greatly facilitate these obligate tasks. Thus, mass spectrometry can be used to verify that the desired protein construct has been correctly expressed, to define compact domains in the target protein, to assess the components contained within the protein crystals, and to screen for successful incorporation of seleno-methionine and other heavy metal reagents used for phasing. In addition, mass spectrometry can be used to address issues of modeling, topology, and side-chain proximity. Here, we demonstrate how rational use of mass spectrometry assists and expedites high resolution X-ray structure determination through each stage of the process of protein crystallography.

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Year:  2001        PMID: 11340052     DOI: 10.1146/annurev.biophys.30.1.67

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  20 in total

1.  Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry.

Authors:  Feixia Chu; Shu-ou Shan; Demetri T Moustakas; Frank Alber; Pascal F Egea; Robert M Stroud; Peter Walter; Alma L Burlingame
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-16       Impact factor: 11.205

Review 2.  Membrane protein crystallization in amphiphile phases: practical and theoretical considerations.

Authors:  Peter Nollert
Journal:  Prog Biophys Mol Biol       Date:  2004-10-07       Impact factor: 3.667

3.  High-throughput limited proteolysis/mass spectrometry for protein domain elucidation.

Authors:  Xia Gao; Kevin Bain; Jeffery B Bonanno; Michelle Buchanan; Davin Henderson; Don Lorimer; Curtis Marsh; Julie A Reynes; J Michael Sauder; Ken Schwinn; Chau Thai; Stephen K Burley
Journal:  J Struct Funct Genomics       Date:  2005

4.  Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94.

Authors:  Feixia Chu; Jason C Maynard; Gabriela Chiosis; Christopher V Nicchitta; Alma L Burlingame
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

5.  Towards a rational approach for heavy-atom derivative screening in protein crystallography.

Authors:  Johnson Agniswamy; M Gordon Joyce; Carl H Hammer; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

6.  Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

Authors:  Yi Shi; Javier Fernandez-Martinez; Elina Tjioe; Riccardo Pellarin; Seung Joong Kim; Rosemary Williams; Dina Schneidman-Duhovny; Andrej Sali; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2014-08-26       Impact factor: 5.911

7.  Ultra-thin layer MALDI mass spectrometry of membrane proteins in nanodiscs.

Authors:  Michael T Marty; Aditi Das; Stephen G Sligar
Journal:  Anal Bioanal Chem       Date:  2011-11-06       Impact factor: 4.142

8.  Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination.

Authors:  Tarun Gheyi; Logan Rodgers; Richard Romero; J Michael Sauder; Stephen K Burley
Journal:  J Am Soc Mass Spectrom       Date:  2010-07-07       Impact factor: 3.109

9.  Integrative structure modeling with the Integrative Modeling Platform.

Authors:  Benjamin Webb; Shruthi Viswanath; Massimiliano Bonomi; Riccardo Pellarin; Charles H Greenberg; Daniel Saltzberg; Andrej Sali
Journal:  Protein Sci       Date:  2017-10-10       Impact factor: 6.725

10.  Revealing Higher Order Protein Structure Using Mass Spectrometry.

Authors:  Brian T Chait; Martine Cadene; Paul Dominic Olinares; Michael P Rout; Yi Shi
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-14       Impact factor: 3.109

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