Literature DB >> 27080007

Revealing Higher Order Protein Structure Using Mass Spectrometry.

Brian T Chait1, Martine Cadene2, Paul Dominic Olinares3, Michael P Rout4, Yi Shi3.   

Abstract

The development of rapid, sensitive, and accurate mass spectrometric methods for measuring peptides, proteins, and even intact protein assemblies has made mass spectrometry (MS) an extraordinarily enabling tool for structural biology. Here, we provide a personal perspective of the increasingly useful role that mass spectrometric techniques are exerting during the elucidation of higher order protein structures. Areas covered in this brief perspective include MS as an enabling tool for the high resolution structural biologist, for compositional analysis of endogenous protein complexes, for stoichiometry determination, as well as for integrated approaches for the structural elucidation of protein complexes. We conclude with a vision for the future role of MS-based techniques in the development of a multi-scale molecular microscope. Graphical Abstract ᅟ.

Entities:  

Keywords:  Electrospray ionization; Endogenous protein complexes; Folding state in solution; Higher order structure; MALDI; Mass spectrometry; Molecular microscope; Native mass spectrometry; Protein assembly; Protein complex; Protein composition; Stoichiometry; Structural biology; X-ray crystallography

Mesh:

Substances:

Year:  2016        PMID: 27080007      PMCID: PMC5125627          DOI: 10.1007/s13361-016-1385-1

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  104 in total

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Authors:  M Cadene; B T Chait
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Review 2.  Studies of noncovalent complexes in an electrospray ionization/time-of-flight mass spectrometer.

Authors:  A N Krutchinsky; A Ayed; L J Donald; W Ens; H W Duckworth; K G Standing
Journal:  Methods Mol Biol       Date:  2000

3.  X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity.

Authors:  Raimund Dutzler; Ernest B Campbell; Martine Cadene; Brian T Chait; Roderick MacKinnon
Journal:  Nature       Date:  2002-01-17       Impact factor: 49.962

Review 4.  Mass spectrometry as a tool for protein crystallography.

Authors:  S L Cohen; B T Chait
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

Review 5.  DNA replication in eukaryotic cells.

Authors:  Stephen P Bell; Anindya Dutta
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

6.  A modular cross-linking approach for exploring protein interactions.

Authors:  Michelle Trester-Zedlitz; Katsuhiko Kamada; Stephen K Burley; David Fenyö; Brian T Chait; Tom W Muir
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

Review 7.  Mass spectrometry-based proteomics.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

8.  Stoichiometry of a ligand-gated ion channel determined by fluorescence energy transfer.

Authors:  S J Farrar; P J Whiting; T P Bonnert; R M McKernan
Journal:  J Biol Chem       Date:  1999-04-09       Impact factor: 5.157

9.  High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.

Authors:  M M Young; N Tang; J C Hempel; C M Oshiro; E W Taylor; I D Kuntz; B W Gibson; G Dollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

10.  The yeast nuclear pore complex: composition, architecture, and transport mechanism.

Authors:  M P Rout; J D Aitchison; A Suprapto; K Hjertaas; Y Zhao; B T Chait
Journal:  J Cell Biol       Date:  2000-02-21       Impact factor: 10.539

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  25 in total

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Review 2.  The Promise of Proteomics in the Study of Oncogenic Viruses.

Authors:  Alison A McBride
Journal:  Mol Cell Proteomics       Date:  2017-01-19       Impact factor: 5.911

3.  From Compact to String-The Role of Secondary and Tertiary Structure in Charge-Induced Unzipping of Gas-Phase Proteins.

Authors:  Stephan Warnke; Waldemar Hoffmann; Jongcheol Seo; Erwin De Genst; Gert von Helden; Kevin Pagel
Journal:  J Am Soc Mass Spectrom       Date:  2016-12-05       Impact factor: 3.109

4.  Vps34 Kinase Domain Dynamics Regulate the Autophagic PI 3-Kinase Complex.

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Review 5.  Cryo-EM of dynamic protein complexes in eukaryotic DNA replication.

Authors:  Jingchuan Sun; Zuanning Yuan; Lin Bai; Huilin Li
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6.  193 nm Ultraviolet Photodissociation Mass Spectrometry of Tetrameric Protein Complexes Provides Insight into Quaternary and Secondary Protein Topology.

Authors:  Lindsay J Morrison; Jennifer S Brodbelt
Journal:  J Am Chem Soc       Date:  2016-08-17       Impact factor: 15.419

7.  Fixed-Charge Trimethyl Pyrilium Modification for Enabling Enhanced Top-Down Mass Spectrometry Sequencing of Intact Protein Complexes.

Authors:  Daniel A Polasky; Frederik Lermyte; Michael Nshanian; Frank Sobott; Phillip C Andrews; Joseph A Loo; Brandon T Ruotolo
Journal:  Anal Chem       Date:  2018-02-02       Impact factor: 6.986

8.  Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry.

Authors:  Yadong Yu; Haichuan Liu; Zanlin Yu; H Ewa Witkowska; Yifan Cheng
Journal:  Mol Cell Proteomics       Date:  2020-09-03       Impact factor: 5.911

9.  Structural Evaluation of Protein/Metal Complexes via Native Electrospray Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Christopher M Crittenden; Elisa T Novelli; M Rachel Mehaffey; Gulan N Xu; David H Giles; Whitney A Fies; Kevin N Dalby; Lauren J Webb; Jennifer S Brodbelt
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10.  Characterization of hydrogen bonding motifs in proteins: hydrogen elimination monitoring by ultraviolet photodissociation mass spectrometry.

Authors:  Lindsay J Morrison; Wenrui Chai; Jake A Rosenberg; Graeme Henkelman; Jennifer S Brodbelt
Journal:  Phys Chem Chem Phys       Date:  2017-08-02       Impact factor: 3.676

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