Literature DB >> 11320327

How the CO in myoglobin acquired its bend: lessons in interpretation of crystallographic data.

B Stec1, G N Phillips.   

Abstract

Contrary to the expectation of chemists, the first X-ray structures of carbon monoxide bound to myoglobin (Mb) showed a highly distorted Fe-C-O bond system. These results appeared to support the idea of a largely steric mechanism for discrimination by the protein against CO binding, a lethal act for the protein in terms of its physiological function. The most recent independently determined high-resolution structures of Mb-CO have allowed the 25 year old controversy concerning the mode of CO binding to be resolved. The CO is now seen to bind in a roughly linear fashion without substantial bending, consistent with chemical expectations and spectroscopic measurements. Access to deposited diffraction data prompted a reevaluation of the sources of the original misinterpretation. A series of careful refinements of models against the data at high (1.1 A) and modest resolutions (1.5 A) have been performed in anisotropic versus isotropic modes. The results suggest that the original artifact was a result of lower quality crystals combined with anisotropic motion and limited resolution of the diffraction data sets. This retrospective analysis should serve as a caution for all researchers using structural tools to draw far-reaching biochemical conclusions.

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Year:  2001        PMID: 11320327     DOI: 10.1107/s0907444901001731

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  The crystal structure of a tetrameric hemoglobin in a partial hemichrome state.

Authors:  Antonio Riccio; Luigi Vitagliano; Guido di Prisco; Adriana Zagari; Lelio Mazzarella
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

2.  Structural studies of constitutive nitric oxide synthases with diatomic ligands bound.

Authors:  Huiying Li; Jotaro Igarashi; Joumana Jamal; Weiping Yang; Thomas L Poulos
Journal:  J Biol Inorg Chem       Date:  2006-06-28       Impact factor: 3.358

3.  Describing protein conformational ensembles: beyond static snapshots.

Authors:  George N Phillips
Journal:  F1000 Biol Rep       Date:  2009-05-08

4.  Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS).

Authors:  Yisong Guo; Hongxin Wang; Yuming Xiao; Sonja Vogt; Rudolf K Thauer; Seigo Shima; Phillip I Volkers; Thomas B Rauchfuss; Vladimir Pelmenschikov; David A Case; Ercan E Alp; Wolfgang Sturhahn; Yoshitaka Yoda; Stephen P Cramer
Journal:  Inorg Chem       Date:  2008-04-12       Impact factor: 5.165

5.  Alternative cyanide-binding modes to the haem iron in haem oxygenase.

Authors:  Masakazu Sugishima; Kenji Oda; Takashi Ogura; Hiroshi Sakamoto; Masato Noguchi; Keiichi Fukuyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-31

6.  Protein structure refinement using 13C alpha chemical shift tensors.

Authors:  Benjamin J Wylie; Charles D Schwieters; Eric Oldfield; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

7.  A model for the flexibility of the distal histidine in dehaloperoxidase-hemoglobin A based on X-ray crystal structures of the carbon monoxide adduct.

Authors:  Junjie Zhao; Vesna de Serrano; Stefan Franzen
Journal:  Biochemistry       Date:  2014-04-08       Impact factor: 3.162

  7 in total

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