Literature DB >> 11281715

Expression, purification, and crystallization of the RGS-like domain from the Rho nucleotide exchange factor, PDZ-RhoGEF, using the surface entropy reduction approach.

S M Garrard1, K L Longenecker, M E Lewis, P J Sheffield, Z S Derewenda.   

Abstract

Lsc-homology domains are found in several eukaryotic nucleotide exchange factors which act on Rho-family GTPases. They show limited amino acid sequence similarity to RGS proteins, which down-regulate the cellular signaling by the alpha-subunits of trimeric G-proteins and have been shown to interact with Galpha12 and Galpha13. It is believed that the RGS-like (RGSL) domain constitutes the functional link between G-protein-coupled receptors and cytosolic Rho-GTPases. We report here the expression, purification, and crystallization of the RGSL domain from the PDZ-RhoGEF. To obtain X-ray-grade crystals we have used the recently proposed approach of crystallization by mutational surface entropy reduction, in which selected Lys --> Ala, Glu --> Ala, and/or combined point mutations are introduced into the target protein to reduce the cumulative conformational entropy of surface residues. Of the five mutants that were designed and prepared, the second one tried (K463A, E465A, E466A) yielded crystals suitable for further analysis and diffracted X-rays to 2.8 A resolution on a home source. The crystals exhibit hexagonal symmetry, space group P6(1) 22 or P6(5) 22, with unit cell parameters a = b = 63.1 A, c = 202.1 A, and contain one molecule in the asymmetric unit. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11281715     DOI: 10.1006/prep.2001.1392

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  13 in total

1.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

Authors:  Thomas U Schwartz; Rudolf Walczak; Günter Blobel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

2.  The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism.

Authors:  Izabela Janda; Yancho Devedjiev; Urszula Derewenda; Zbigniew Dauter; Jakub Bielnicki; David R Cooper; Paul C F Graf; Andrzej Joachimiak; Ursula Jakob; Zygmunt S Derewenda
Journal:  Structure       Date:  2004-10       Impact factor: 5.006

3.  An approach to crystallizing proteins by synthetic symmetrization.

Authors:  D Rey Banatao; Duilio Cascio; Christopher S Crowley; Mark R Fleissner; Heather L Tienson; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

4.  Improving the chances of successful protein structure determination with a random forest classifier.

Authors:  Samad Jahandideh; Lukasz Jaroszewski; Adam Godzik
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-02-15

5.  Metal ion-mediated reduction in surface entropy improves diffraction quality of crystals of the IRAK-4 death domain.

Authors:  Michael V Lasker; Santosh M Kuruvilla; Mark M Gajjar; Anubhav Kapoor; Satish K Nair
Journal:  J Biomol Tech       Date:  2006-04

6.  Systematic replacement of lysine with glutamine and alanine in Escherichia coli malate synthase G: effect on crystallization.

Authors:  David M Anstrom; Leslie Colip; Brian Moshofsky; Eric Hatcher; S James Remington
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-24

7.  Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.

Authors:  Devin W Close; Craig Don Paul; Patricia S Langan; Matthew C J Wilce; Daouda A K Traore; Randal Halfmann; Reginaldo C Rocha; Geoffery S Waldo; Riley J Payne; Joseph B Rucker; Mark Prescott; Andrew R M Bradbury
Journal:  Proteins       Date:  2015-05-08

Review 8.  The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability.

Authors:  Zygmunt S Derewenda; Adam Godzik
Journal:  Methods Mol Biol       Date:  2017

9.  It's all in the crystals….

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Targeting the SH2-kinase interface in Bcr-Abl inhibits leukemogenesis.

Authors:  Florian Grebien; Oliver Hantschel; John Wojcik; Ines Kaupe; Boris Kovacic; Arkadiusz M Wyrzucki; Gerald D Gish; Sabine Cerny-Reiterer; Akiko Koide; Hartmut Beug; Tony Pawson; Peter Valent; Shohei Koide; Giulio Superti-Furga
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

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