Literature DB >> 11238379

Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

T Singer1, C Yordan, R A Martienssen.   

Abstract

Robertson's Mutator transposable elements in maize undergo cycles of activity and then inactivity that correlate with changes in cytosine methylation. Mutator-like elements are present in the Arabidopsis genome but are heavily methylated and inactive. These elements become demethylated and active in the chromatin-remodeling mutant ddm1 (Decrease in DNA Methylation), which leads to loss of heterochromatic DNA methylation. Thus, DNA transposons in plants appear to be regulated by chromatin remodeling. In inbred ddm1 strains, transposed elements may account, in part, for mutant phenotypes unlinked to ddm1. Gene silencing and paramutation are also regulated by DDM1, providing support for the proposition that epigenetic silencing is related to transposon regulation.

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Year:  2001        PMID： 11238379      PMCID： PMC312647          DOI： 10.1101/gad.193701

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  52 in total

1.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

2.  Developmental abnormalities and epimutations associated with DNA hypomethylation mutations.

Authors:  T Kakutani; J A Jeddeloh; S K Flowers; K Munakata; E J Richards
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

3.  Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylation.

Authors:  R J Gibbons; T L McDowell; S Raman; D M O'Rourke; D Garrick; H Ayyub; D R Higgs
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

4.  Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.

Authors:  X Lin; S Kaul; S Rounsley; T P Shea; M I Benito; C D Town; C Y Fujii; T Mason; C L Bowman; M Barnstead; T V Feldblyum; C R Buell; K A Ketchum; J Lee; C M Ronning; H L Koo; K S Moffat; L A Cronin; M Shen; G Pai; S Van Aken; L Umayam; L J Tallon; J E Gill; M D Adams; A J Carrera; T H Creasy; H M Goodman; C R Somerville; G P Copenhaver; D Preuss; W C Nierman; O White; J A Eisen; S L Salzberg; C M Fraser; J C Venter
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

5.  Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

Authors:  K Mayer; C Schüller; R Wambutt; G Murphy; G Volckaert; T Pohl; A Düsterhöft; W Stiekema; K D Entian; N Terryn; B Harris; W Ansorge; P Brandt; L Grivell; M Rieger; M Weichselgartner; V de Simone; B Obermaier; R Mache; M Müller; M Kreis; M Delseny; P Puigdomenech; M Watson; T Schmidtheini; B Reichert; D Portatelle; M Perez-Alonso; M Boutry; I Bancroft; P Vos; J Hoheisel; W Zimmermann; H Wedler; P Ridley; S A Langham; B McCullagh; L Bilham; J Robben; J Van der Schueren; B Grymonprez; Y J Chuang; F Vandenbussche; M Braeken; I Weltjens; M Voet; I Bastiaens; R Aert; E Defoor; T Weitzenegger; G Bothe; U Ramsperger; H Hilbert; M Braun; E Holzer; A Brandt; S Peters; M van Staveren; W Dirske; P Mooijman; R Klein Lankhorst; M Rose; J Hauf; P Kötter; S Berneiser; S Hempel; M Feldpausch; S Lamberth; H Van den Daele; A De Keyser; C Buysshaert; J Gielen; R Villarroel; R De Clercq; M Van Montagu; J Rogers; A Cronin; M Quail; S Bray-Allen; L Clark; J Doggett; S Hall; M Kay; N Lennard; K McLay; R Mayes; A Pettett; M A Rajandream; M Lyne; V Benes; S Rechmann; D Borkova; H Blöcker; M Scharfe; M Grimm; T H Löhnert; S Dose; M de Haan; A Maarse; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; B Fartmann; K Granderath; D Dauner; A Herzl; S Neumann; A Argiriou; D Vitale; R Liguori; E Piravandi; O Massenet; F Quigley; G Clabauld; A Mündlein; R Felber; S Schnabl; R Hiller; W Schmidt; A Lecharny; S Aubourg; F Chefdor; R Cooke; C Berger; A Montfort; E Casacuberta; T Gibbons; N Weber; M Vandenbol; M Bargues; J Terol; A Torres; A Perez-Perez; B Purnelle; E Bent; S Johnson; D Tacon; T Jesse; L Heijnen; S Schwarz; P Scholler; S Heber; P Francs; C Bielke; D Frishman; D Haase; K Lemcke; H W Mewes; S Stocker; P Zaccaria; M Bevan; R K Wilson; M de la Bastide; K Habermann; L Parnell; N Dedhia; L Gnoj; K Schutz; E Huang; L Spiegel; M Sehkon; J Murray; P Sheet; M Cordes; J Abu-Threideh; T Stoneking; J Kalicki; T Graves; G Harmon; J Edwards; P Latreille; L Courtney; J Cloud; A Abbott; K Scott; D Johnson; P Minx; D Bentley; B Fulton; N Miller; T Greco; K Kemp; J Kramer; L Fulton; E Mardis; M Dante; K Pepin; L Hillier; J Nelson; J Spieth; E Ryan; S Andrews; C Geisel; D Layman; H Du; J Ali; A Berghoff; K Jones; K Drone; M Cotton; C Joshu; B Antonoiu; M Zidanic; C Strong; H Sun; B Lamar; C Yordan; P Ma; J Zhong; R Preston; D Vil; M Shekher; A Matero; R Shah; I K Swaby; A O'Shaughnessy; M Rodriguez; J Hoffmann; S Till; S Granat; N Shohdy; A Hasegawa; A Hameed; M Lodhi; A Johnson; E Chen; M Marra; R Martienssen; W R McCombie
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

6.  Epigenetic inheritance at the agouti locus in the mouse.

Authors:  H D Morgan; H G Sutherland; D I Martin; E Whitelaw
Journal:  Nat Genet       Date:  1999-11       Impact factor: 38.330

7.  The complete sequence of a heterochromatic island from a higher eukaryote. The Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium.

Authors: 
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

8.  Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region.

Authors:  P F Fransz; S Armstrong; J H de Jong; L D Parnell; C van Drunen; C Dean; P Zabel; T Bisseling; G H Jones
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

9.  Transposon diversity in Arabidopsis thaliana.

Authors:  Q H Le; S Wright; Z Yu; T Bureau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

10.  Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation.

Authors:  H Hirochika; H Okamoto; T Kakutani
Journal:  Plant Cell       Date:  2000-03       Impact factor: 11.277
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  132 in total

Review 1.  The rest is silence.

Authors:  E Bernstein; A M Denli; G J Hannon
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

2.  A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing.

Authors:  Damon Lisch; Charles C Carey; Jane E Dorweiler; Vicki L Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  Inducible DNA demethylation mediated by the maize Suppressor-mutator transposon-encoded TnpA protein.

Authors:  Hongchang Cui; Nina V Fedoroff
Journal:  Plant Cell       Date:  2002-11       Impact factor: 11.277

4.  Genes and transposons are differentially methylated in plants, but not in mammals.

Authors:  Pablo D Rabinowicz; Lance E Palmer; Bruce P May; Michael T Hemann; Scott W Lowe; W Richard McCombie; Robert A Martienssen
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

Review 5.  Gene silencing-based disease resistance.

Authors:  Michael Wassenegger
Journal:  Transgenic Res       Date:  2002-12       Impact factor: 2.788

6.  Expression profile analysis of the low-oxygen response in Arabidopsis root cultures.

Authors:  Erik Jan Klok; Iain W Wilson; Dale Wilson; Scott C Chapman; Rob M Ewing; Shauna C Somerville; W James Peacock; Rudy Dolferus; Elizabeth S Dennis
Journal:  Plant Cell       Date:  2002-10       Impact factor: 11.277

7.  Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis.

Authors:  Stacey Melquist; Judith Bender
Journal:  Genes Dev       Date:  2003-07-31       Impact factor: 11.361

8.  Strand-biased DNA methylation associated with centromeric regions in Arabidopsis.

Authors:  Song Luo; Daphne Preuss
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

9.  Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation.

Authors:  Andrzej T Wierzbicki; Andrzej Jerzmanowski
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

10.  Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase.

Authors:  Michelle L Ebbs; Judith Bender
Journal:  Plant Cell       Date:  2006-03-31       Impact factor: 11.277
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