Literature DB >> 11237606

Apparent two-state tendamistat folding is a sequential process along a defined route.

A Bachmann1, T Kiefhaber.   

Abstract

The small all-beta-sheet protein tendamistat folds and unfolds rapidly in apparent two-state reactions. Kinetic measurements of two tendamistat variants under various solvent conditions reveal, however, that folding occurs in at least two sequential steps through a metastable obligatory intermediate. Depending on the solvent conditions either step can become rate limiting. The activation parameters indicate that the first step represents an enthalpic barrier whereas the second step is an entropic barrier at 25 degrees C. Our results suggest that initial non-specific collapse precedes formation of native secondary and tertiary structure in tendamistat folding. This points at a distinct route in tendamistat folding and indicates that partially folded metastable intermediates might play an important role in the mechanism of apparent two-state folding.

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Year:  2001        PMID: 11237606     DOI: 10.1006/jmbi.2000.4399

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  25 in total

1.  Multiple folding pathways of the SH3 domain.

Authors:  Jose M Borreguero; Feng Ding; Sergey V Buldyrev; H Eugene Stanley; Nikolay V Dokholyan
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  GB1 is not a two-state folder: identification and characterization of an on-pathway intermediate.

Authors:  Angela Morrone; Rajanish Giri; Rudesh D Toofanny; Carlo Travaglini-Allocatelli; Maurizio Brunori; Valerie Daggett; Stefano Gianni
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains.

Authors:  Beth G Wensley; Lee Gyan Kwa; Sarah L Shammas; Joseph M Rogers; Stuart Browning; Ziqi Yang; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

4.  Correspondence between anomalous m- and DeltaCp-values in protein folding.

Authors:  Daniel E Otzen; Mikael Oliveberg
Journal:  Protein Sci       Date:  2004-12       Impact factor: 6.725

5.  Spectrin R16: broad energy barrier or sequential transition states?

Authors:  Kathryn A Scott; Jane Clarke
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

6.  Exploring subdomain cooperativity in T4 lysozyme II: uncovering the C-terminal subdomain as a hidden intermediate in the kinetic folding pathway.

Authors:  Jason Cellitti; Rachel Bernstein; Susan Marqusee
Journal:  Protein Sci       Date:  2007-03-30       Impact factor: 6.725

7.  Shifting transition states in the unfolding of a large ankyrin repeat protein.

Authors:  Nicolas D Werbeck; Pamela J E Rowling; Vasuki R Chellamuthu; Laura S Itzhaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

Review 8.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

9.  Multiple Unfolding Intermediates Obtained by Molecular Dynamic Simulations under Stretching for Immunoglobulin-Binding Domain of Protein G.

Authors:  Anna V Glyakina; Nikolai K Balabaev; Oxana V Galzitskaya
Journal:  Open Biochem J       Date:  2009-11-23

10.  The folding pathway of a single domain in a multidomain protein is not affected by its neighbouring domain.

Authors:  Sarah Batey; Jane Clarke
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

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