Literature DB >> 15557266

Correspondence between anomalous m- and DeltaCp-values in protein folding.

Daniel E Otzen1, Mikael Oliveberg.   

Abstract

Proteins folding according to a classical two-state system characteristically show V-shaped chevron plots. We have previously interpreted the symmetrically curved chevron plot of the protein U1A as denaturant-dependent movements in the position of the transition state ensemble (TSE). S6, a structural analog of U1A, shows a classical V-shaped chevron plot indicative of straightforward two-state kinetics, but the mutant LA30 has a curved unfolding limb, which is most consistent with TSE mobility. The kinetic m-values (derivatives of the rate constants with respect to denaturant concentration) in themselves depend on denaturant concentration. To obtain complementary information about putative mobile TSEs, we have carried out a thermodynamic analysis of the three proteins, based on data for refolding and unfolding over the range 10 degrees C to 70 degrees C. The data at all temperatures can be fitted to two-state model systems. Importantly, for all three proteins the activation heat capacities are, within error, identical to the heat capacities measured in independent experiments under equilibrium conditions. Although the equilibrium heat capacities are essentially invariant with regard to denaturant concentration, the activation heat capacities, similar to the structurally equivalent kinetic m-values, show marked denaturant dependence. Furthermore, the values of beta++ at different denaturant concentrations measured by m-values and by heat capacity values are very similar. These observations are consistent with significant transition state movements within the framework of two-state folding. The basis for TSE movement appears to be enthalpic rather than entropic, suggesting that the binding energy of denaturant-protein interactions is a major determinant of the response of energy landscape contours to changing environments.

Entities:  

Mesh:

Year:  2004        PMID: 15557266      PMCID: PMC2287299          DOI: 10.1110/ps.04991004

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  36 in total

1.  Calorimetric study of the heat and cold denaturation of beta-lactoglobulin.

Authors:  Y V Griko; P L Privalov
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

2.  Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding.

Authors:  S J Hagen; J Hofrichter; A Szabo; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

3.  Thermodynamic properties of an extremely rapid protein folding reaction.

Authors:  T Schindler; F X Schmid
Journal:  Biochemistry       Date:  1996-12-24       Impact factor: 3.162

4.  Thermal unfolding of the N-terminal RNA binding domain of the human U1A protein studied by differential scanning calorimetry.

Authors:  J Lu; K B Hall
Journal:  Biophys Chem       Date:  1997-02-28       Impact factor: 2.352

5.  Movement of the position of the transition state in protein folding.

Authors:  A Matouschek; D E Otzen; L S Itzhaki; S E Jackson; A R Fersht
Journal:  Biochemistry       Date:  1995-10-17       Impact factor: 3.162

6.  Negative activation enthalpies in the kinetics of protein folding.

Authors:  M Oliveberg; Y J Tan; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-12       Impact factor: 11.205

7.  Folding of a four-helix bundle: studies of acyl-coenzyme A binding protein.

Authors:  B B Kragelund; C V Robinson; J Knudsen; C M Dobson; F M Poulsen
Journal:  Biochemistry       Date:  1995-05-30       Impact factor: 3.162

8.  Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding.

Authors:  A Matouschek; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

9.  Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength: evidence for residual electrostatic interactions in the acid/thermally denatured state.

Authors:  M Oliveberg; S Vuilleumier; A R Fersht
Journal:  Biochemistry       Date:  1994-07-26       Impact factor: 3.162

10.  Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea.

Authors:  C M Johnson; A R Fersht
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

View more
  9 in total

1.  Determination of barrier heights and prefactors from protein folding rate data.

Authors:  S S Plotkin
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

2.  Cold instability of aponeocarzinostatin and its stabilization by labile chromophore.

Authors:  Kandaswamy Jayachithra; Thallampuranam Krishnaswamy Suresh Kumar; Ta-Jung Lu; Chin Yu; Der-Hang Chin
Journal:  Biophys J       Date:  2005-04-08       Impact factor: 4.033

3.  Hydration of the folding transition state ensemble of a protein.

Authors:  Ludovic Brun; Daniel G Isom; Priya Velu; Bertrand García-Moreno; Catherine Ann Royer
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

4.  Stabilization of a protein conferred by an increase in folded state entropy.

Authors:  Shlomi Dagan; Tzachi Hagai; Yulian Gavrilov; Ruti Kapon; Yaakov Levy; Ziv Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

5.  Probing the protein-folding mechanism using denaturant and temperature effects on rate constants.

Authors:  Emily J Guinn; Wayne S Kontur; Oleg V Tsodikov; Irina Shkel; M Thomas Record
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

6.  Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins.

Authors:  Zhuqing Zhang; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-29       Impact factor: 11.205

7.  Quantitating denaturation by formic acid: imperfect repeats are essential to the stability of the functional amyloid protein FapC.

Authors:  Line Friis Bakmann Christensen; Jan Stanislaw Nowak; Thorbjørn Vincent Sønderby; Signe Andrea Frank; Daniel Erik Otzen
Journal:  J Biol Chem       Date:  2020-07-21       Impact factor: 5.157

8.  The conformational stability and thermodynamics of Fur A (ferric uptake regulator) from Anabaena sp. PCC 7119.

Authors:  José A Hernández; Jörg Meier; Francisco N Barrera; Olga Ruiz de los Paños; Estefanía Hurtado-Gómez; M Teresa Bes; María F Fillat; M Luisa Peleato; Claudio N Cavasotto; José L Neira
Journal:  Biophys J       Date:  2005-09-16       Impact factor: 4.033

9.  Thermodynamics of unfolding of an integral membrane protein in mixed micelles.

Authors:  Pankaj Sehgal; Daniel E Otzen
Journal:  Protein Sci       Date:  2006-04       Impact factor: 6.725

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.