Literature DB >> 15881400

DNA microarrays--techniques and applications in microbial systems.

T Majtán1, G Bukovská, J Timko.   

Abstract

Genome projects produce a huge amount of sequence information. As a result, the focus of genomics research is turning toward deduction of functional information about newly discovered genes. Thus structural genomics paves the way for a new discipline called functional genomics by providing the information required for microarray manufacture. Microarray technology is the result of automation and miniaturization in the detection of differential gene expression. By using this technology one can make a parallel analysis of RNA abundance and DNA homology for thousands of genes in a single experiment. Over the past several years, this unique technology has been used to explore hundreds transcriptional patterns and genome differences for a variety of microbial species. Applications of microarrays extend beyond the boundaries of basic biology into diagnostics, environmental monitoring, pharmacology, toxicology and biotechnology. We describe comprehensive nature of DNA microarray technology with emphasis on fabrication of DNA microarrays and application of this technology in biological environment with primary accent on microbial systems.

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Year:  2004        PMID: 15881400     DOI: 10.1007/bf02931546

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN: 0015-5632            Impact factor:   2.099


  165 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  It's easy to build your own microarrayer!

Authors:  A Thompson; S Lucchini; J C Hinton
Journal:  Trends Microbiol       Date:  2001-04       Impact factor: 17.079

3.  RNA expression analysis using a 30 base pair resolution Escherichia coli genome array.

Authors:  D W Selinger; K J Cheung; R Mei; E M Johansson; C S Richmond; F R Blattner; D J Lockhart; G M Church
Journal:  Nat Biotechnol       Date:  2000-12       Impact factor: 54.908

4.  Global gene expression profiling in Escherichia coli K12. The effects of integration host factor.

Authors:  S M Arfin; A D Long; E T Ito; L Tolleri; M M Riehle; E S Paegle; G W Hatfield
Journal:  J Biol Chem       Date:  2000-09-22       Impact factor: 5.157

5.  Selection of optimal DNA oligos for gene expression arrays.

Authors:  F Li; G D Stormo
Journal:  Bioinformatics       Date:  2001-11       Impact factor: 6.937

6.  DNA arrays for analysis of gene expression.

Authors:  M B Eisen; P O Brown
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

Review 7.  Options available--from start to finish--for obtaining expression data by microarray.

Authors:  D D Bowtell
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

8.  Gene expression changes triggered by exposure of Haemophilus influenzae to novobiocin or ciprofloxacin: combined transcription and translation analysis.

Authors:  H Gmuender; K Kuratli; C P Gray; W Keck; S Evers
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

9.  Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays.

Authors:  G K Geiss; R E Bumgarner; M C An; M B Agy; A B van 't Wout; E Hammersmark; V S Carter; D Upchurch; J I Mullins; M G Katze
Journal:  Virology       Date:  2000-01-05       Impact factor: 3.616

10.  Monitoring cellular responses to Listeria monocytogenes with oligonucleotide arrays.

Authors:  P Cohen; M Bouaboula; M Bellis; V Baron; O Jbilo; C Poinot-Chazel; S Galiègue; E H Hadibi; P Casellas
Journal:  J Biol Chem       Date:  2000-04-14       Impact factor: 5.157

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  6 in total

1.  Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Authors:  Michelle D Brazas; Joseph Tadashi Yamada; B F Francis Ouellette
Journal:  Nucleic Acids Res       Date:  2009-06-15       Impact factor: 16.971

2.  Detection of SEN virus in the general population and different risk groups in Slovakia.

Authors:  I Schréter; P Kristian; P Jarcuska; S Porubcin; L Siegfried; E Birosová; A Rajnic; A Gocalová
Journal:  Folia Microbiol (Praha)       Date:  2006       Impact factor: 2.629

3.  Adjacent location of the bac gene and two-component regulatory system genes within the putative Streptococcus agalactiae pathogenicity island.

Authors:  A Dmitriev; Y H Yang; A D Shen; A Totolian
Journal:  Folia Microbiol (Praha)       Date:  2006       Impact factor: 2.629

4.  Analyzing the gene expression profile of pediatric acute myeloid leukemia with real-time PCR arrays.

Authors:  Tao Yan-Fang; Wu Dong; Pang Li; Zhao Wen-Li; Lu Jun; Wang Na; Wang Jian; Feng Xing; Li Yan-Hong; Ni Jian; Pan Jian
Journal:  Cancer Cell Int       Date:  2012-09-08       Impact factor: 5.722

Review 5.  Microbial diversity in the era of omic technologies.

Authors:  Sofia Nikolaki; George Tsiamis
Journal:  Biomed Res Int       Date:  2013-10-24       Impact factor: 3.411

6.  Future Veterinary Diagnostics.

Authors:  Bob Dahlhausen
Journal:  J Exot Pet Med       Date:  2010-09-19       Impact factor: 0.453

  6 in total

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