Literature DB >> 11212888

Microarrays under the microscope.

S E Wildsmith1, F J Elcock.   

Abstract

Microarray technology is a rapidly advancing area, which is gaining popularity in many biological disciplines from drug target identification to predictive toxicology. Over the past few years, there has been a dramatic increase in the number of methods and techniques available for carrying out this form of gene expression analysis. The techniques and associated peripherals, such as slide types, deposition methods, robotics, and scanning equipment, are undergoing constant improvement, helping to drive the technology forward in terms of robustness and ease of use. These rapid developments, combined with the number of options available and the associated hyperbole, can prove daunting for the new user. This review aims to guide the researcher through the various steps of conducting microarray experiments, from initial strategy to analysing the data, with critical examination of the benefits and disadvantages along the way.

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Year:  2001        PMID: 11212888      PMCID: PMC1186994          DOI: 10.1136/mp.54.1.8

Source DB:  PubMed          Journal:  Mol Pathol        ISSN: 1366-8714


  30 in total

Review 1.  Concise review: gene expression applied to toxicology.

Authors:  S Farr; R T Dunn
Journal:  Toxicol Sci       Date:  1999-07       Impact factor: 4.849

Review 2.  Expression profiling: DNA arrays in many guises.

Authors:  S Granjeaud; F Bertucci; B R Jordan
Journal:  Bioessays       Date:  1999-09       Impact factor: 4.345

3.  Multiprobe RNase protection assay with internally labeled radioactive probes, generated by RT-PCR and nested PCR.

Authors:  M von Wolff; S Tabibzadeh
Journal:  Front Biosci       Date:  1999-07-01

4.  One-stop shop for microarray data.

Authors:  A Brazma; A Robinson; G Cameron; M Ashburner
Journal:  Nature       Date:  2000-02-17       Impact factor: 49.962

Review 5.  Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry.

Authors:  M Merchant; S R Weinberger
Journal:  Electrophoresis       Date:  2000-04       Impact factor: 3.535

Review 6.  Options available--from start to finish--for obtaining expression data by microarray.

Authors:  D D Bowtell
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

7.  Microarray fabrication with covalent attachment of DNA using bubble jet technology.

Authors:  T Okamoto; T Suzuki; N Yamamoto
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

8.  In vivo gene expression profile analysis of human breast cancer progression.

Authors:  D C Sgroi; S Teng; G Robinson; R LeVangie; J R Hudson; A G Elkahloun
Journal:  Cancer Res       Date:  1999-11-15       Impact factor: 12.701

9.  Rapid analysis of gene expression (RAGE) facilitates universal expression profiling.

Authors:  A Wang; A Pierce; K Judson-Kremer; S Gaddis; C M Aldaz; D G Johnson; M C MacLeod
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 10.  High density synthetic oligonucleotide arrays.

Authors:  R J Lipshutz; S P Fodor; T R Gingeras; D J Lockhart
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

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  10 in total

1.  Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs.

Authors:  G C MacIntosh; C Wilkerson; P J Green
Journal:  Plant Physiol       Date:  2001-11       Impact factor: 8.340

2.  New molecular phenotypes in the dst mutants of Arabidopsis revealed by DNA microarray analysis.

Authors:  M A Pérez-Amador; P Lidder; M A Johnson; J Landgraf; E Wisman; P J Green
Journal:  Plant Cell       Date:  2001-12       Impact factor: 11.277

Review 3.  Comparative evaluation of microarray analysis software.

Authors:  Daniel K Liu; Bin Yao; Brian Fayz; David D Womble; Stephen A Krawetz
Journal:  Mol Biotechnol       Date:  2004-03       Impact factor: 2.695

4.  High quality RNA isolation from tumours with low cellularity and high extracellular matrix component for cDNA microarrays: application to chondrosarcoma.

Authors:  H J Baelde; A M Cleton-Jansen; H van Beerendonk; M Namba; J V Bovée; P C Hogendoorn
Journal:  J Clin Pathol       Date:  2001-10       Impact factor: 3.411

5.  Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action.

Authors:  Moriyah Zik; Vivian F Irish
Journal:  Plant Cell       Date:  2003-01       Impact factor: 11.277

Review 6.  The impact of expression profiling on prognostic and predictive testing in breast cancer.

Authors:  J S Reis-Filho; C Westbury; J-Y Pierga
Journal:  J Clin Pathol       Date:  2006-03       Impact factor: 3.411

7.  Octylphenol and UV-B radiation alter larval development and hypothalamic gene expression in the leopard frog (Rana pipiens).

Authors:  Douglas Crump; David Lean; Vance L Trudeau
Journal:  Environ Health Perspect       Date:  2002-03       Impact factor: 9.031

8.  Molecular genetics complexity impeding research progress in breast and ovarian cancers.

Authors:  Ishita Gupta; Ikram Burney; Mansour S Al-Moundhri; Yahya Tamimi
Journal:  Mol Clin Oncol       Date:  2017-05-29

9.  Functional genomics as a tool in virus research.

Authors:  Ruchi Ratra; Sunil K Lal
Journal:  Indian J Microbiol       Date:  2008-07-27       Impact factor: 2.461

10.  Future Veterinary Diagnostics.

Authors:  Bob Dahlhausen
Journal:  J Exot Pet Med       Date:  2010-09-19       Impact factor: 0.453

  10 in total

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