Literature DB >> 11177831

Probing chromosome structure with dynamic force relaxation.

M G Poirier1, A Nemani, P Gupta, S Eroglu, J F Marko.   

Abstract

We report measurements of the dynamics of force relaxation in single mitotic chromosomes, following step strains applied with micropipettes of force constant approximately 1 nN/microm. The force relaxes exponentially after an elongation (l/l(0)) to less than 3x native length, with a relaxation time approximately 2 sec. This relaxation time corresponds to an effective viscosity approximately 10(5) times that of water. We experimentally rule out solvent flow into the chromosome as the mechanism for the relaxation time. Instead, the relaxation can be explained in terms of the disentanglement dynamics of approximately 80 kb chromatin loop domains.

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Year:  2001        PMID: 11177831     DOI: 10.1103/PhysRevLett.86.360

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  Mitotic chromosome scaffold structure: new approaches to an old controversy.

Authors:  Andrew S Belmont
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

Review 2.  Optical tweezers stretching of chromatin.

Authors:  Lisa H Pope; Martin L Bennink; Jan Greve
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

Review 3.  Micromechanical studies of mitotic chromosomes.

Authors:  M G Poirier; J F Marko
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

4.  Effects of intermediate bound states in dynamic force spectroscopy.

Authors:  Imre Derényi; Denis Bartolo; Armand Ajdari
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

5.  Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations.

Authors:  T R Einert; C E Sing; A Alexander-Katz; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-14       Impact factor: 1.890

Review 6.  Design features of a mitotic spindle: balancing tension and compression at a single microtubule kinetochore interface in budding yeast.

Authors:  David C Bouck; Ajit P Joglekar; Kerry S Bloom
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

Review 7.  Micromechanical studies of mitotic chromosomes.

Authors:  John F Marko
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

8.  Dynamics of active semiflexible polymers.

Authors:  A Ghosh; N S Gov
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

9.  Using contact statistics to characterize structure transformation of biopolymer ensembles.

Authors:  Priyojit Das; Rosela Golloshi; Rachel Patton McCord; Tongye Shen
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

10.  Discontinuous growth of DNA plectonemes due to atomic scale friction.

Authors:  Yifei Min; Prashant K Purohit
Journal:  Soft Matter       Date:  2018-09-26       Impact factor: 3.679

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