Literature DB >> 14990459

Effects of intermediate bound states in dynamic force spectroscopy.

Imre Derényi1, Denis Bartolo, Armand Ajdari.   

Abstract

We revisit some aspects of the interpretation of dynamic force spectroscopy experiments. The standard theory predicts that the typical unbinding force f* is linearly proportional to the logarithm of the loading rate r when a single energy barrier controls the unbinding process. For a more complex situation of N barriers, it predicts at most N linear segments for the f* vs. log(r) curve, each segment characterizing a different barrier. Here we extend this existing picture using a refined approximation, provide a more general analytical formula, and show that in principle up to N(N + 1) / 2 segments can show up experimentally. As a consequence, the determination of the positions and even the number of the energy barriers from the experimental data can be ambiguous. A further possible consequence of a multiple-barrier landscape is a bimodal or multimodal distribution of the unbinding force at certain loading rates, a feature recently observed experimentally.

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Year:  2004        PMID: 14990459      PMCID: PMC1303967          DOI: 10.1016/S0006-3495(04)74200-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

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Review 5.  Protein-protein unbinding induced by force: single-molecule studies.

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Authors:  E Evans; K Ritchie
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

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10.  Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force.

Authors:  H Grubmüller; B Heymann; P Tavan
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  17 in total

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7.  Theoretical analysis of single-molecule force spectroscopy experiments: heterogeneity of chemical bonds.

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8.  Forced-unfolding and force-quench refolding of RNA hairpins.

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9.  Methods and estimations of uncertainties in single-molecule dynamic force spectroscopy.

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10.  A transformation for the mechanical fingerprints of complex biomolecular interactions.

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