Literature DB >> 11171083

Two-iron rubredoxin of Pseudomonas oleovorans: production, stability and characterization of the individual iron-binding domains by optical, CD and NMR spectroscopies.

A Perry1, L Y Lian, N S Scrutton.   

Abstract

A minigene encoding the C-terminal domain of the 2Fe rubredoxin of Pseudomonas oleovorans was created from the parental alk G gene contained in the expression plasmid pKK223-3. The vector directed the high-level production of the C-terminal domain of this rubredoxin; a simple procedure was used to purify the recombinant domain in the 1Fe form. The 1Fe form of the C-terminal domain was readily converted into the apoprotein and cadmium forms after precipitation with trichloroacetic acid and resolubilization in the presence or absence of cadmium chloride respectively. In steady-state assays, the recombinant 1Fe C-terminal domain is redox-active and able to transfer electrons from reduced rubredoxin reductase to cytochrome c. The absorption spectrum and dichroic features of the CD spectrum for the iron- and cadmium-substituted C-terminal domain are similar to those reported for the iron- and cadmium-substituted Desulfovibrio gigas rubredoxin [Henehen, Pountney, Zerbe and Vasak (1993) Protein Sci. 2, 1756-1764]. Difference absorption spectroscopy of the cadmium-substituted C-terminal domain revealed the presence of four Gaussian-resolved maxima at 202, 225, 240 and 276 nm; from Jørgensen's electronegativity theory, the 240 nm band is attributable to a CysS-Cd(II) charge-transfer excitation. Attempts to express the N-terminal domain of the 2Fe rubredoxin directly from a minigene were unsuccessful. However, the N-terminal domain was isolated through cleavage of an engineered 2Fe rubredoxin in which a factor Xa proteolysis site had been introduced into the putative interdomain linker. The N-terminal domain is characterized by absorption spectra typical of the 1Fe rubredoxins. The domain is folded as determined by CD and NMR spectroscopies and is redox-active. However, the N-terminal domain is less stable than the isolated C-terminal domain, a finding consistent with the known properties of the full-length 2Fe and cadmium-substituted Ps. oleovorans rubredoxin.

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Year:  2001        PMID: 11171083      PMCID: PMC1221632          DOI: 10.1042/0264-6021:3540089

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  42 in total

1.  The structure of rubredoxin from Desulfovibrio desulfuricans strain 27774 at 1.5 A resolution.

Authors:  R E Stenkamp; L C Sieker; L H Jensen
Journal:  Proteins       Date:  1990

2.  Comparison of the X-ray structure of native rubredoxin from Pyrococcus furiosus with the NMR structure of the zinc-substituted protein.

Authors:  P R Blake; M W Day; B T Hsu; L Joshua-Tor; J B Park; D R Hare; M W Adams; D C Rees; M F Summers
Journal:  Protein Sci       Date:  1992-11       Impact factor: 6.725

3.  Amino acid sequence and function of rubredoxin from Desulfovibrio vulgaris Miyazaki.

Authors:  F Shimizu; M Ogata; T Yagi; S Wakabayashi; H Matsubara
Journal:  Biochimie       Date:  1989 Nov-Dec       Impact factor: 4.079

4.  Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints.

Authors:  G Eggink; H Engel; G Vriend; P Terpstra; B Witholt
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469

5.  Rubredoxin in crystalline state.

Authors:  L C Sieker; R E Stenkamp; J LeGall
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

6.  Identification of six open reading frames from a region of the Azotobacter vinelandii genome likely involved in dihydrogen metabolism.

Authors:  J C Chen; L E Mortenson
Journal:  Biochim Biophys Acta       Date:  1992-06-15

7.  Determinants of protein hyperthermostability: purification and amino acid sequence of rubredoxin from the hyperthermophilic archaebacterium Pyrococcus furiosus and secondary structure of the zinc adduct by NMR.

Authors:  P R Blake; J B Park; F O Bryant; S Aono; J K Magnuson; E Eccleston; J B Howard; M F Summers; M W Adams
Journal:  Biochemistry       Date:  1991-11-12       Impact factor: 3.162

8.  Identification of cysteine ligands in metalloproteins using optical and NMR spectroscopy: cadmium-substituted rubredoxin as a model [Cd(CysS)4]2- center.

Authors:  C J Henehan; D L Pountney; O Zerbe; M Vasák
Journal:  Protein Sci       Date:  1993-10       Impact factor: 6.725

9.  Solution-state structure by NMR of zinc-substituted rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.

Authors:  P R Blake; J B Park; Z H Zhou; D R Hare; M W Adams; M F Summers
Journal:  Protein Sci       Date:  1992-11       Impact factor: 6.725

10.  Structure of rubredoxin from Desulfovibrio vulgaris at 1.5 A resolution.

Authors:  E T Adman; L C Sieker; L H Jensen
Journal:  J Mol Biol       Date:  1991-01-20       Impact factor: 5.469

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  8 in total

1.  Rubredoxins involved in alkane oxidation.

Authors:  Jan B van Beilen; Martin Neuenschwander; Theo H M Smits; Christian Roth; Stefanie B Balada; Bernard Witholt
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

2.  Substrate specificity and reaction mechanism of purified alkane hydroxylase from the hydrocarbonoclastic bacterium Alcanivorax borkumensis (AbAlkB).

Authors:  Swe-Htet Naing; Saba Parvez; Marilla Pender-Cudlip; John T Groves; Rachel N Austin
Journal:  J Inorg Biochem       Date:  2012-12-30       Impact factor: 4.155

3.  Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.

Authors:  Michael Proudfoot; Stephen A Sanders; Alex Singer; Rongguang Zhang; Greg Brown; Andrew Binkowski; Linda Xu; Jonathan A Lukin; Alexey G Murzin; Andrzej Joachimiak; Cheryl H Arrowsmith; Aled M Edwards; Alexei V Savchenko; Alexander F Yakunin
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

4.  Characterization and two-dimensional crystallization of membrane component AlkB of the medium-chain alkane hydroxylase system from Pseudomonas putida GPo1.

Authors:  Hernan Alonso; Anna Roujeinikova
Journal:  Appl Environ Microbiol       Date:  2012-08-31       Impact factor: 4.792

5.  Introducing DInaMo: A Package for Calculating Protein Circular Dichroism Using Classical Electromagnetic Theory.

Authors:  Igor V Uporov; Neville Y Forlemu; Rahul Nori; Tsvetan Aleksandrov; Boris A Sango; Yvonne E Bongfen Mbote; Sandeep Pothuganti; Kathryn A Thomasson
Journal:  Int J Mol Sci       Date:  2015-09-07       Impact factor: 5.923

6.  Electrochemical Hydroxylation of C3-C12 n-Alkanes by Recombinant Alkane Hydroxylase (AlkB) and Rubredoxin-2 (AlkG) from Pseudomonas putida GPo1.

Authors:  Yi-Fang Tsai; Wen-I Luo; Jen-Lin Chang; Chun-Wei Chang; Huai-Chun Chuang; Ravirala Ramu; Guor-Tzo Wei; Jyh-Myng Zen; Steve S-F Yu
Journal:  Sci Rep       Date:  2017-08-21       Impact factor: 4.379

Review 7.  An Overview of the Electron-Transfer Proteins That Activate Alkane Monooxygenase (AlkB).

Authors:  Shoshana C Williams; Rachel Narehood Austin
Journal:  Front Microbiol       Date:  2022-02-28       Impact factor: 5.640

8.  YacG from Escherichia coli is a specific endogenous inhibitor of DNA gyrase.

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Journal:  Nucleic Acids Res       Date:  2008-06-27       Impact factor: 16.971

  8 in total

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