Literature DB >> 2091025

The structure of rubredoxin from Desulfovibrio desulfuricans strain 27774 at 1.5 A resolution.

R E Stenkamp1, L C Sieker, L H Jensen.   

Abstract

The structure of a small rubredoxin from the bacterium Desulfovibrio desulfuricans has been determined and refined at 1.5 A resolution. The hairpin loop containing seven residues in other rubredoxins is missing in this 45 residue molecule, and once that fact was determined by amino acid sequencing studies, refinement progressed smoothly to an R value of 0.093 for all reflections from 5 to 1.5 A resolution. Nearly all of the water molecules in the well-ordered triclinic unit cell have been added to the crystallographic model. As in the other refined rubredoxin models, the Fe-S4 complex is slightly distorted from ideal tetrahedral coordination.

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Year:  1990        PMID: 2091025     DOI: 10.1002/prot.340080409

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  13 in total

Review 1.  Knowledge-based model building of proteins: concepts and examples.

Authors:  J Bajorath; R Stenkamp; A Aruffo
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

2.  Dynamics and unfolding pathways of a hyperthermophilic and a mesophilic rubredoxin.

Authors:  T Lazaridis; I Lee; M Karplus
Journal:  Protein Sci       Date:  1997-12       Impact factor: 6.725

3.  Protein contributions to redox potentials of homologous rubredoxins: an energy minimization study.

Authors:  P D Swartz; T Ichiye
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

4.  Modeling the structure of Pyrococcus furiosus rubredoxin by homology to other X-ray structures.

Authors:  J E Wampler; E A Bradley; D E Stewart; M W Adams
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

5.  Cloning, sequencing and expression in Escherichia coli of the rubredoxin gene from Clostridium pasteurianum.

Authors:  I Mathieu; J Meyer; J M Moulis
Journal:  Biochem J       Date:  1992-07-01       Impact factor: 3.857

6.  Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta.

Authors:  K Schweimer; S Hoffmann; J Wastl; U G Maier; P Rösch; H Sticht
Journal:  Protein Sci       Date:  2000-08       Impact factor: 6.725

7.  Experimental and DFT Investigations Reveal the Influence of the Outer Coordination Sphere on the Vibrational Spectra of Nickel-Substituted Rubredoxin, a Model Hydrogenase Enzyme.

Authors:  Jeffrey W Slater; Sean C Marguet; Sabrina L Cirino; Pearson T Maugeri; Hannah S Shafaat
Journal:  Inorg Chem       Date:  2017-03-21       Impact factor: 5.165

8.  Recombinant two-iron rubredoxin of Pseudomonas oleovorans: overexpression, purification and characterization by optical, CD and 113Cd NMR spectroscopies.

Authors:  H J Lee; L Y Lian; N S Scrutton
Journal:  Biochem J       Date:  1997-11-15       Impact factor: 3.857

9.  Structures of DNA-binding mutant zinc finger domains: implications for DNA binding.

Authors:  R C Hoffman; S J Horvath; R E Klevit
Journal:  Protein Sci       Date:  1993-06       Impact factor: 6.725

10.  Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein.

Authors:  Z Dauter; K S Wilson; L C Sieker; J M Moulis; J Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

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