Literature DB >> 11159392

Toroidal condensates of semiflexible polymers in poor solvents: adsorption, stretching, and compression.

G G Pereira1, D R Williams.   

Abstract

When a semiflexible polymer chain is placed in a poor solvent, or in the presence of condensing agents, a toroidal condensate can result. In typical experiments, these condensates are adsorbed to surfaces. Here we examine the changes that can occur when a toroid is adsorbed. We then examine the behavior of a toroid when stretched and identify two regimes: a weak stretching regime where the toroid deforms from a circle to an ellipse, and a strong stretching regime where a tether is pulled from the toroid. In the weak stretching regime, the force increases linearly with separation whereas in the strong stretching regime, the applied force is a constant. We then look at the case of a toroid compressed in the plane of the toroid. In this case the form of the force law depends on how strongly the toroid wets the surfaces. In general, an inverse square force law is found.

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Year:  2001        PMID: 11159392      PMCID: PMC1301223          DOI: 10.1016/S0006-3495(01)76004-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

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4.  Applications for atomic force microscopy of DNA.

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Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

5.  A constant radius of curvature model for the organization of DNA in toroidal condensates.

Authors:  N V Hud; K H Downing; R Balhorn
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6.  Gene therapy's growing pains.

Authors:  E Marshall
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Authors:  M Radmacher; J P Cleveland; M Fritz; H G Hansma; P K Hansma
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

8.  DNA binding to mica correlates with cationic radius: assay by atomic force microscopy.

Authors:  H G Hansma; D E Laney
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

9.  Polymer- and salt-induced toroids of hexagonal DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1995-01       Impact factor: 4.033

Review 10.  An evaluation of receptor-mediated gene transfer using synthetic DNA-ligand complexes.

Authors:  J C Perales; T Ferkol; M Molas; R W Hanson
Journal:  Eur J Biochem       Date:  1994-12-01
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  2 in total

1.  Competition between supercoils and toroids in single molecule DNA condensation.

Authors:  David Argudo; Prashant K Purohit
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

2.  Structure and properties of DNA in apolar solvents.

Authors:  Annalisa Arcella; Guillem Portella; Rosana Collepardo-Guevara; Debayan Chakraborty; David J Wales; Modesto Orozco
Journal:  J Phys Chem B       Date:  2014-07-14       Impact factor: 2.991

  2 in total

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