Literature DB >> 7724602

A constant radius of curvature model for the organization of DNA in toroidal condensates.

N V Hud1, K H Downing, R Balhorn.   

Abstract

Toroidal DNA condensates have received considerable attention for their possible relationship to the packaging of DNA in viruses and in general as a model of ordered DNA condensation. A spool-like model has primarily been supported for DNA organization within toroids. However, our observations suggest that the actual organization may be considerably different. We present an alternate model in which DNA for a given toroid is organized within a series of equally sized contiguous loops that precess about the toroid axis. A related model for the toroid formation process is also presented. This kinetic model predicts a distribution of toroid sizes for DNA condensed from solution that is in good agreement with experimental data.

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Year:  1995        PMID: 7724602      PMCID: PMC42211          DOI: 10.1073/pnas.92.8.3581

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Compact form of DNA induced by spermidine.

Authors:  L C Gosule; J A Schellman
Journal:  Nature       Date:  1976-01-29       Impact factor: 49.962

2.  Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.

Authors:  R W Wilson; V A Bloomfield
Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

3.  Spermidine-condensed phi X174 DNA cleavage by micrococcal nuclease: torus cleavage model and evidence for unidirectional circumferential DNA wrapping.

Authors:  K A Marx; T C Reynolds
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

4.  DNA flexibility studied by covalent closure of short fragments into circles.

Authors:  D Shore; J Langowski; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-08       Impact factor: 11.205

5.  DNA arrangement in isometric phage heads.

Authors:  W C Earnshaw; S C Harrison
Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

6.  DNA condensation with polyamines I. Spectroscopic studies.

Authors:  L C Gosule; J A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

7.  DNA condensation with polyamines. II. Electron microscopic studies.

Authors:  D K Chattoraj; L C Gosule; A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

8.  Cation-induced toroidal condensation of DNA studies with Co3+(NH3)6.

Authors:  J Widom; R L Baldwin
Journal:  J Mol Biol       Date:  1980-12-25       Impact factor: 5.469

9.  Thermodynamic stability theory for DNA doughnut shapes induced by charge neutralization.

Authors:  G S Manning
Journal:  Biopolymers       Date:  1980-01       Impact factor: 2.505

10.  Structure of viral phi 29 DNA condensed by simple triamines: a light-scattering and electron-microscopy study.

Authors:  S A Allison; J C Herr; J M Schurr
Journal:  Biopolymers       Date:  1981-03       Impact factor: 2.505

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  35 in total

1.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

2.  Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength.

Authors:  Christine C Conwell; Igor D Vilfan; Nicholas V Hud
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-18       Impact factor: 11.205

3.  Modulating DNA configuration by interfacial traction: an elastic rod model to characterize DNA folding and unfolding.

Authors:  Zaixing Huang
Journal:  J Biol Phys       Date:  2010-09-02       Impact factor: 1.365

4.  Langevin dynamics simulations of genome packing in bacteriophage.

Authors:  Christopher Forrey; M Muthukumar
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

5.  Structure of toroidal DNA collapsed inside the phage capsid.

Authors:  Amélie Leforestier; Françoise Livolant
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-22       Impact factor: 11.205

Review 6.  DNA curvature and flexibility in vitro and in vivo.

Authors:  Justin P Peters; L James Maher
Journal:  Q Rev Biophys       Date:  2010-05-18       Impact factor: 5.318

7.  A geometrical template for toroidal aggregates of chiral macromolecules.

Authors:  J Charvolin; J-F Sadoc
Journal:  Eur Phys J E Soft Matter       Date:  2008-04-09       Impact factor: 1.890

8.  Double-stranded DNA breaks hidden in the neutral Comet assay suggest a role of the sperm nuclear matrix in DNA integrity maintenance.

Authors:  J Ribas-Maynou; J E Gawecka; J Benet; W S Ward
Journal:  Mol Hum Reprod       Date:  2013-11-26       Impact factor: 4.025

9.  Extended, relaxed, and condensed conformations of hyaluronan observed by atomic force microscopy.

Authors:  Mary K Cowman; Chiara Spagnoli; Dina Kudasheva; Min Li; Ansil Dyal; Sonoko Kanai; Endre A Balazs
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

10.  Mouse spermatozoa contain a nuclease that is activated by pretreatment with EGTA and subsequent calcium incubation.

Authors:  Segal M Boaz; Kenneth Dominguez; Jeffrey A Shaman; W Steven Ward
Journal:  J Cell Biochem       Date:  2008-04-01       Impact factor: 4.429

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