Literature DB >> 11156602

Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56.

M Zhang1, M R Green.   

Abstract

The human 56-kD U2AF(65)-associated protein (hUAP56), a member of the DExD/H box protein family of RNA-dependent ATPases, is required for the stable binding of U2 snRNP to the pre-mRNA branchpoint. Here we identify a highly conserved Saccharomyces cerevisiae homolog of hUAP56, yUAP/Sub2p. yUAP/Sub2p can be functionally substituted for by hUAP56 and, like its human counterpart, is an essential pre-mRNA splicing factor. yUAP/Sub2p is required for formation of the commitment complex, the precursor for U2 snRNP addition. In conjunction with previous studies, we conclude that at least two DExD/H box proteins, Prp5p and yUAP/Sub2p, mediate the U2 snRNP-branchpoint interaction.

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Year:  2001        PMID: 11156602      PMCID: PMC312605          DOI: 10.1101/gad.851701

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  30 in total

1.  Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing.

Authors:  B Seraphin; M Rosbash
Journal:  Cell       Date:  1989-10-20       Impact factor: 41.582

2.  RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2.

Authors:  P L Raghunathan; C Guthrie
Journal:  Curr Biol       Date:  1998-07-16       Impact factor: 10.834

Review 3.  Mechanical devices of the spliceosome: motors, clocks, springs, and things.

Authors:  J P Staley; C Guthrie
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

4.  The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes.

Authors:  J D Wagner; E Jankowsky; M Company; A M Pyle; J N Abelson
Journal:  EMBO J       Date:  1998-05-15       Impact factor: 11.598

5.  The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro.

Authors:  B Laggerbauer; T Achsel; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

6.  A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.

Authors:  R Higuchi; B Krummel; R K Saiki
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

7.  Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase.

Authors:  A L Kistler; C Guthrie
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

8.  Multiple roles for the yeast SUB2/yUAP56 gene in splicing.

Authors:  D Libri; N Graziani; C Saguez; J Boulay
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

9.  PRP5: a helicase-like protein required for mRNA splicing in yeast.

Authors:  G Dalbadie-McFarland; J Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

10.  Developmental regulation of SPO13, a gene required for separation of homologous chromosomes at meiosis I.

Authors:  H T Wang; S Frackman; J Kowalisyn; R E Esposito; R Elder
Journal:  Mol Cell Biol       Date:  1987-04       Impact factor: 4.272

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  47 in total

1.  The ATP requirement for U2 snRNP addition is linked to the pre-mRNA region 5' to the branch site.

Authors:  C M Newnham; C C Query
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

2.  Intron status and 3'-end formation control cotranscriptional export of mRNA.

Authors:  Elissa P Lei; Pamela A Silver
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

3.  5' exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly.

Authors:  Vienna L Reichert; Hervé Le Hir; Melissa S Jurica; Melissa J Moore
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

4.  Cotranscriptional recruitment of the serine-arginine-rich (SR)-like proteins Gbp2 and Hrb1 to nascent mRNA via the TREX complex.

Authors:  Ed Hurt; Ming-Juan Luo; Susanne Röther; Robin Reed; Katja Strässer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-09       Impact factor: 11.205

5.  p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5' splice site duplex.

Authors:  Zhi-Ren Liu
Journal:  Mol Cell Biol       Date:  2002-08       Impact factor: 4.272

6.  Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes.

Authors:  Katharine Compton Abruzzi; Scott Lacadie; Michael Rosbash
Journal:  EMBO J       Date:  2004-06-10       Impact factor: 11.598

7.  Viral factors reveal a role for REF/Aly in nuclear RNA stability.

Authors:  Sarah H Stubbs; Olga V Hunter; Ashley Hoover; Nicholas K Conrad
Journal:  Mol Cell Biol       Date:  2012-01-30       Impact factor: 4.272

8.  Crystal structure of the human ATP-dependent splicing and export factor UAP56.

Authors:  Hang Shi; Olivier Cordin; C Michael Minder; Patrick Linder; Rui-Ming Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-07       Impact factor: 11.205

9.  Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis.

Authors:  Sander Granneman; Kara A Bernstein; Franziska Bleichert; Susan J Baserga
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

10.  Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

Authors:  Rhonda Perriman; Manuel Ares
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

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