Literature DB >> 11144753

Spatial mixture modeling of fMRI data.

N V Hartvig1, J L Jensen.   

Abstract

Recently, Everitt and Bullmore [1999] proposed a mixture model for a test statistic for activation in fMRI data. The distribution of the statistic was divided into two components; one for nonactivated voxels and one for activated voxels. In this framework one can calculate a posterior probability for a voxel being activated, which provides a more natural basis for thresholding the statistic image, than that based on P-values. In this article, we extend the method of Everitt and Bullmore to account for spatial coherency of activated regions. We achieve this by formulating a model for the activation in a small region of voxels and using this spatial structure when calculating the posterior probability of a voxel being activated. We have investigated several choices of spatial models but find that they all work equally well for brain imaging data. We applied the model to synthetic data from statistical image analysis, a synthetic fMRI data set and to visual stimulation data. Our conclusion is that the method improves the estimation of the activation pattern significantly, compared to the nonspatial model and to smoothing the data with a kernel of FWHM 3 voxels. The difference between FWHM 2 smoothing and our method were more modest.

Mesh:

Year:  2000        PMID: 11144753      PMCID: PMC6871941          DOI: 10.1002/1097-0193(200012)11:4<233::aid-hbm10>3.0.co;2-f

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  12 in total

1.  Global, voxel, and cluster tests, by theory and permutation, for a difference between two groups of structural MR images of the brain.

Authors:  E T Bullmore; J Suckling; S Overmeyer; S Rabe-Hesketh; E Taylor; M J Brammer
Journal:  IEEE Trans Med Imaging       Date:  1999-01       Impact factor: 10.048

2.  A unified statistical approach for determining significant signals in images of cerebral activation.

Authors:  K J Worsley; S Marrett; P Neelin; A C Vandal; K J Friston; A C Evans
Journal:  Hum Brain Mapp       Date:  1996       Impact factor: 5.038

3.  Improved assessment of significant activation in functional magnetic resonance imaging (fMRI): use of a cluster-size threshold.

Authors:  S D Forman; J D Cohen; M Fitzgerald; W F Eddy; M A Mintun; D C Noll
Journal:  Magn Reson Med       Date:  1995-05       Impact factor: 4.668

4.  Spatiotemporal imaging of human brain activity using functional MRI constrained magnetoencephalography data: Monte Carlo simulations.

Authors:  A K Liu; J W Belliveau; A M Dale
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

5.  fMRI signal restoration using a spatio-temporal Markov Random Field preserving transitions.

Authors:  X Descombes; F Kruggel; D Y von Cramon
Journal:  Neuroimage       Date:  1998-11       Impact factor: 6.556

6.  Mixture model mapping of the brain activation in functional magnetic resonance images.

Authors:  B S Everitt; E T Bullmore
Journal:  Hum Brain Mapp       Date:  1999       Impact factor: 5.038

7.  Analysis of fMRI time-series revisited--again.

Authors:  K J Worsley; K J Friston
Journal:  Neuroimage       Date:  1995-09       Impact factor: 6.556

8.  Statistical methods of estimation and inference for functional MR image analysis.

Authors:  E Bullmore; M Brammer; S C Williams; S Rabe-Hesketh; N Janot; A David; J Mellers; R Howard; P Sham
Journal:  Magn Reson Med       Date:  1996-02       Impact factor: 4.668

9.  Analysis of individual positron emission tomography activation maps by detection of high signal-to-noise-ratio pixel clusters.

Authors:  J B Poline; B M Mazoyer
Journal:  J Cereb Blood Flow Metab       Date:  1993-05       Impact factor: 6.200

10.  Processing strategies for time-course data sets in functional MRI of the human brain.

Authors:  P A Bandettini; A Jesmanowicz; E C Wong; J S Hyde
Journal:  Magn Reson Med       Date:  1993-08       Impact factor: 4.668

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  28 in total

1.  Functional Brain Image Analysis Using Joint Function-Structure Priors.

Authors:  Jing Yang; Xenophon Papademetris; Lawrence H Staib; Robert T Schultz; James S Duncan
Journal:  Med Image Comput Comput Assist Interv       Date:  2004-01-01

2.  Alternative thresholding methods for fMRI data optimized for surgical planning.

Authors:  William L Gross; Jeffrey R Binder
Journal:  Neuroimage       Date:  2013-09-08       Impact factor: 6.556

3.  Investigations into resting-state connectivity using independent component analysis.

Authors:  Christian F Beckmann; Marilena DeLuca; Joseph T Devlin; Stephen M Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

4.  An evaluation of spatial thresholding techniques in fMRI analysis.

Authors:  Brent R Logan; Maya P Geliazkova; Daniel B Rowe
Journal:  Hum Brain Mapp       Date:  2008-12       Impact factor: 5.038

5.  Model-based clustering of meta-analytic functional imaging data.

Authors:  Jane Neumann; D Yves von Cramon; Gabriele Lohmann
Journal:  Hum Brain Mapp       Date:  2008-02       Impact factor: 5.038

Review 6.  Pitfalls in FMRI.

Authors:  Sven Haller; Andreas J Bartsch
Journal:  Eur Radiol       Date:  2009-06-06       Impact factor: 5.315

7.  Activated region fitting: a robust high-power method for fMRI analysis using parameterized regions of activation.

Authors:  Wouter D Weeda; Lourens J Waldorp; Ingrid Christoffels; Hilde M Huizenga
Journal:  Hum Brain Mapp       Date:  2009-08       Impact factor: 5.038

8.  Bayesian analysis of fMRI data with ICA based spatial prior.

Authors:  Deepti R Bathula; Hemant D Tagare; Lawrence H Staib; Xenophon Papademetris; Robert T Schultz; James S Duncan
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

9.  A functional network estimation method of resting-state fMRI using a hierarchical Markov random field.

Authors:  Wei Liu; Suyash P Awate; Jeffrey S Anderson; P Thomas Fletcher
Journal:  Neuroimage       Date:  2014-06-17       Impact factor: 6.556

10.  LEVEL SET BASED CLUSTERING FOR ANALYSIS OF FUNCTIONAL MRI DATA.

Authors:  D R Bathula; X Papademetris; J S Duncan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2007
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