Literature DB >> 10368298

The three-dimensional structure of a DNA translocating machine at 10 A resolution.

J M Valpuesta1, J J Fernández, J M Carazo, J L Carrascosa.   

Abstract

BACKGROUND: Head-tail connectors are viral substructures that are very important in the viral morphogenetic cycle, having roles in the formation of the precursor capsid (prohead), DNA packaging, tail binding to the mature head and in the infection process. Structural information on the connector would, therefore, help us to understand how this structure is related to a multiplicity of functions.
RESULTS: Recombinant bacteriophage phi29 connectors have been crystallized in two-dimensional aggregates. An average projection image and a three-dimensional map have been obtained at 8 A and 10 A resolution, respectively, from untilted and tilted images of vitrified specimens of the two-dimensional crystals. The average projection image reveals a central mass surrounding a channel with 12 appendages protruding from the central mass. The three-dimensional map reveals a wide domain surrounded by 12 appendages that interact with the prohead vertex, and a narrow domain that interacts with the bacteriophage tail. At the junction of the two domains, 12 smaller appendages are visualized. A channel runs along the axis of the connector structure and is sufficiently wide to allow a double-stranded DNA molecule to pass through.
CONCLUSIONS: The propeller-like structure of the phi29 connector strengthens the notion of the connector rotating during DNA packaging. The groove formed by the two lanes of large and small appendages may act as a rail to prevent the liberation of the connector from the prohead vertex during rotation.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10368298     DOI: 10.1016/s0969-2126(99)80039-2

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  10 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Phi29 family of phages.

Authors:  W J Meijer; J A Horcajadas; M Salas
Journal:  Microbiol Mol Biol Rev       Date:  2001-06       Impact factor: 11.056

3.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

4.  Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6.

Authors:  Nelli J Karhu; Gabija Ziedaite; Dennis H Bamford; Jaana K H Bamford
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

5.  Purification and functional characterization of p16, the ATPase of the bacteriophage Phi29 packaging machinery.

Authors:  B Ibarra; J M Valpuesta; J L Carrascosa
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

Review 6.  Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy.

Authors:  Tae Jin Lee; Chad Schwartz; Peixuan Guo
Journal:  Ann Biomed Eng       Date:  2009-06-04       Impact factor: 3.934

7.  Affinity of molecular interactions in the bacteriophage phi29 DNA packaging motor.

Authors:  Mark A Robinson; Jonathan P A Wood; Stephanie A Capaldi; Andrew J Baron; Christopher Gell; D Alastair Smith; Nicola J Stonehouse
Journal:  Nucleic Acids Res       Date:  2006-05-19       Impact factor: 16.971

8.  Controlling bacteriophage phi29 DNA-packaging motor by addition or discharge of a peptide at N-terminus of connector protein that interacts with pRNA.

Authors:  Jianhe Sun; Ying Cai; Wulf-Dieter Moll; Peixuan Guo
Journal:  Nucleic Acids Res       Date:  2006-10-04       Impact factor: 16.971

9.  Binding of pRNA to the N-terminal 14 amino acids of connector protein of bacteriophage phi29.

Authors:  Feng Xiao; Wulf-Dieter Moll; Songchuan Guo; Peixuan Guo
Journal:  Nucleic Acids Res       Date:  2005-05-10       Impact factor: 16.971

10.  Fabrication of massive sheets of single layer patterned arrays using lipid directed reengineered phi29 motor dodecamer.

Authors:  Feng Xiao; Jinchuan Sun; Oana Coban; Peter Schoen; Joseph Che-Yen Wang; R Holland Cheng; Peixuan Guo
Journal:  ACS Nano       Date:  2009-01-27       Impact factor: 15.881

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.