Literature DB >> 11125124

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms--an update.

M V Osier1, K H Cheung, J R Kidd, A J Pakstis, P L Miller, K K Kidd.   

Abstract

ALFRED (the ALelle FREquency Database) is designed to store and disseminate frequencies of alleles at human polymorphic sites for multiple populations, primarily for the population genetics and molecular anthropology communities. Currently ALFRED has information on over 180 polymorphic sites for more than 70 populations. Since our initial release of the database we have focussed on increasing the quantity and quality of data, making reciprocal links between ALFRED and other related databases, and providing useful tools to make the data more comprehensible to the end user. ALFRED is accessible from the Kidd Lab home page (http://info.med.yale. edu/genetics/kkidd/) or from ALFRED directly (http://alfred.med.yale. edu/alfred/index.asp).

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Year:  2001        PMID: 11125124      PMCID: PMC29769          DOI: 10.1093/nar/29.1.317

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.

Authors:  K H Cheung; M V Osier; J R Kidd; A J Pakstis; P L Miller; K K Kidd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  dbSNP: a database of single nucleotide polymorphisms.

Authors:  E M Smigielski; K Sirotkin; M Ward; S T Sherry
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Characterization of single-nucleotide polymorphisms in coding regions of human genes.

Authors:  M Cargill; D Altshuler; J Ireland; P Sklar; K Ardlie; N Patil; N Shaw; C R Lane; E P Lim; N Kalyanaraman; J Nemesh; L Ziaugra; L Friedland; A Rolfe; J Warrington; R Lipshutz; G Q Daley; E S Lander
Journal:  Nat Genet       Date:  1999-07       Impact factor: 38.330

4.  Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations.

Authors:  K A Goddard; P J Hopkins; J M Hall; J S Witte
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

5.  ALFRED: a Web-accessible allele frequency database.

Authors:  K H Cheung; P L Miller; J R Kidd; K K Kidd; M V Osier; A J Pakstis
Journal:  Pac Symp Biocomput       Date:  2000

6.  HGBASE: a database of SNPs and other variations in and around human genes.

Authors:  A J Brookes; H Lehväslaiho; M Siegfried; J G Boehm; Y P Yuan; C M Sarkar; P Bork; F Ortigao
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

7.  A global haplotype analysis of the myotonic dystrophy locus: implications for the evolution of modern humans and for the origin of myotonic dystrophy mutations.

Authors:  S A Tishkoff; A Goldman; F Calafell; W C Speed; A S Deinard; B Bonne-Tamir; J R Kidd; A J Pakstis; T Jenkins; K K Kidd
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

8.  Short tandem repeat polymorphism evolution in humans.

Authors:  F Calafell; A Shuster; W C Speed; J R Kidd; K K Kidd
Journal:  Eur J Hum Genet       Date:  1998-01       Impact factor: 4.246

9.  Global patterns of linkage disequilibrium at the CD4 locus and modern human origins.

Authors:  S A Tishkoff; E Dietzsch; W Speed; A J Pakstis; J R Kidd; K Cheung; B Bonné-Tamir; A S Santachiara-Benerecetti; P Moral; M Krings
Journal:  Science       Date:  1996-03-08       Impact factor: 47.728

10.  Haplotypes and linkage disequilibrium at the phenylalanine hydroxylase locus, PAH, in a global representation of populations.

Authors:  J R Kidd; A J Pakstis; H Zhao; R B Lu; F E Okonofua; A Odunsi; E Grigorenko; B B Tamir; J Friedlaender; L O Schulz; J Parnas; K K Kidd
Journal:  Am J Hum Genet       Date:  2000-04-27       Impact factor: 11.025

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1.  Quantitative similarity-based association tests using population samples.

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Journal:  Am J Hum Genet       Date:  2001-07-30       Impact factor: 11.025

2.  Comparisons of two methods for haplotype reconstruction and haplotype frequency estimation from population data.

Authors:  S Zhang; A J Pakstis; K K Kidd; H Zhao
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Journal:  Am J Hum Genet       Date:  2002-06-05       Impact factor: 11.025

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5.  Application of six IrisPlex SNPs and comparison of two eye color prediction systems in diverse Eurasia populations.

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7.  Variability of the rs333 in Polish patients with lupus erythematosus.

Authors:  Dominika Mlicka; Anna Duleba; Rafał Czajkowski; Mariusz Gawrych; Anna Woźniacka; Ewa Robak; Marta Gorzkiewicz; Szymon Kozłowski; Tomasz Grzybowski; Katarzyna Skonieczna
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Authors:  Roman Shraga; Sarah Yarnall; Sonya Elango; Arun Manoharan; Sally Ann Rodriguez; Sara L Bristow; Neha Kumar; Mohammad Niknazar; David Hoffman; Shahin Ghadir; Rita Vassena; Serena H Chen; Avner Hershlag; Jamie Grifo; Oscar Puig
Journal:  BMC Genet       Date:  2017-11-28       Impact factor: 2.797

9.  Computing power and sample size for case-control association studies with copy number polymorphism: application of mixture-based likelihood ratio test.

Authors:  Wonkuk Kim; Derek Gordon; Jonathan Sebat; Kenny Q Ye; Stephen J Finch
Journal:  PLoS One       Date:  2008-10-22       Impact factor: 3.240

10.  Recent Selection on a Class I ADH Locus Distinguishes Southwest Asian Populations Including Ashkenazi Jews.

Authors:  Sheng Gu; Hui Li; Andrew J Pakstis; William C Speed; David Gurwitz; Judith R Kidd; Kenneth K Kidd
Journal:  Genes (Basel)       Date:  2018-09-07       Impact factor: 4.096

  10 in total

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