Literature DB >> 9585589

A global haplotype analysis of the myotonic dystrophy locus: implications for the evolution of modern humans and for the origin of myotonic dystrophy mutations.

S A Tishkoff1, A Goldman, F Calafell, W C Speed, A S Deinard, B Bonne-Tamir, J R Kidd, A J Pakstis, T Jenkins, K K Kidd.   

Abstract

Haplotypes consisting of the (CTG)n repeat, as well as several flanking markers at the myotonic dystrophy (DM) locus, were analyzed in normal individuals from 25 human populations (5 African, 2 Middle Eastern, 3 European, 6 East Asian, 3 Pacific/Australo-Melanesian, and 6 Amerindian) and in five nonhuman primate species. Non-African populations have a subset of the haplotype diversity present in Africa, as well as a shared pattern of allelic association. (CTG)18-35 alleles (large normal) were observed only in northeastern African and non-African populations and exhibit strong linkage disequilibrium with three markers flanking the (CTG)n repeat. The pattern of haplotype diversity and linkage disequilibrium observed supports a recent African-origin model of modern human evolution and suggests that the original mutation event that gave rise to DM-causing alleles arose in a population ancestral to non-Africans prior to migration of modern humans out of Africa.

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Year:  1998        PMID: 9585589      PMCID: PMC1377140          DOI: 10.1086/301861

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  44 in total

1.  ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.

Authors:  K H Cheung; M V Osier; J R Kidd; A J Pakstis; P L Miller; K K Kidd
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  ALFRED: an allele frequency database for diverse populations and DNA polymorphisms--an update.

Authors:  M V Osier; K H Cheung; J R Kidd; A J Pakstis; P L Miller; K K Kidd
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  The accuracy of statistical methods for estimation of haplotype frequencies: an example from the CD4 locus.

Authors:  S A Tishkoff; A J Pakstis; G Ruano; K K Kidd
Journal:  Am J Hum Genet       Date:  2000-06-19       Impact factor: 11.025

4.  Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms.

Authors:  W S Watkins; C E Ricker; M J Bamshad; M L Carroll; S V Nguyen; M A Batzer; H C Harpending; A R Rogers; L B Jorde
Journal:  Am J Hum Genet       Date:  2001-02-15       Impact factor: 11.025

5.  Linkage disequilibrium at the ADH2 and ADH3 loci and risk of alcoholism.

Authors:  M Osier; A J Pakstis; J R Kidd; J F Lee; S J Yin; H C Ko; H J Edenberg; R B Lu; K K Kidd
Journal:  Am J Hum Genet       Date:  1999-04       Impact factor: 11.025

6.  Extensive linkage disequilibrium in small human populations in Eurasia.

Authors:  Henrik Kaessmann; Sebastian Zöllner; Anna C Gustafsson; Victor Wiebe; Maris Laan; Joakim Lundeberg; Mathias Uhlén; Svante Pääbo
Journal:  Am J Hum Genet       Date:  2002-01-28       Impact factor: 11.025

7.  Global analysis of ATM polymorphism reveals significant functional constraint.

Authors:  Y R Thorstenson; P Shen; V G Tusher; T L Wayne; R W Davis; G Chu; P J Oefner
Journal:  Am J Hum Genet       Date:  2001-07-03       Impact factor: 11.025

8.  Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels.

Authors:  L Frisse; R R Hudson; A Bartoszewicz; J D Wall; J Donfack; A Di Rienzo
Journal:  Am J Hum Genet       Date:  2001-08-29       Impact factor: 11.025

9.  Consistent long-range linkage disequilibrium generated by admixture in a Bantu-Semitic hybrid population.

Authors:  J F Wilson; D B Goldstein
Journal:  Am J Hum Genet       Date:  2000-08-28       Impact factor: 11.025

10.  Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.

Authors:  S A Tishkoff; A J Pakstis; M Stoneking; J R Kidd; G Destro-Bisol; A Sanjantila; R B Lu; A S Deinard; G Sirugo; T Jenkins; K K Kidd; A G Clark
Journal:  Am J Hum Genet       Date:  2000-09-13       Impact factor: 11.025

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