Literature DB >> 10592263

The homeodomain resource: a prototype database for a large protein family.

S Banerjee-Basu1, J F Ryan, A D Baxevanis.   

Abstract

The Homeodomain Resource is an annotated collection of non-redundant protein sequences, three-dimensional structures and genomic information for the homeodomain protein family. Release 2.0 contains 765 full-length homeodomain-containing sequences, 29 experimentally derived structures and 116 homeobox loci implicated in human genetic disorders. Entries are fully hyperlinked to facilitate easy retrieval of the original records from source databases. A simple search engine with a graphical user interface is provided to query the component databases and assemble customized data sets. A new feature for this release is the addition of more automated methods for database searching, maintenance and implementation of efficient data management. The Homeodomain Resource is freely available through the WWW at http://genome.nhgri.nih.gov/homeodomain

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Year:  2000        PMID： 10592263      PMCID： PMC102490          DOI： 10.1093/nar/28.1.329

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  11 in total

Review 1.  DNA binding specificity of homeodomains.

Authors:  A Laughon
Journal:  Biochemistry       Date:  1991-12-03       Impact factor: 3.162

2.  Crystallization and preliminary X-ray diffraction studies of the engrailed homeodomain and of an engrailed homeodomain/DNA complex.

Authors:  B Liu; C R Kissinger; C O Pabo
Journal:  Biochem Biophys Res Commun       Date:  1990-08-31       Impact factor: 3.575

3.  Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions.

Authors:  C R Kissinger; B S Liu; E Martin-Blanco; T B Kornberg; C O Pabo
Journal:  Cell       Date:  1990-11-02       Impact factor: 41.582

4.  The Homeodomain Resource: sequences, structures and genomic information.

Authors:  S Banerjee-Basu; E S Ferlanti; J F Ryan; A D Baxevanis
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  The structure of the Antennapedia homeodomain determined by NMR spectroscopy in solution: comparison with prokaryotic repressors.

Authors:  Y Q Qian; M Billeter; G Otting; M Müller; W J Gehring; K Wüthrich
Journal:  Cell       Date:  1989-11-03       Impact factor: 41.582

6.  Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions.

Authors:  C Wolberger; A K Vershon; B Liu; A D Johnson; C O Pabo
Journal:  Cell       Date:  1991-11-01       Impact factor: 41.582

Review 7.  Homeodomain-DNA recognition.

Authors:  W J Gehring; Y Q Qian; M Billeter; K Furukubo-Tokunaga; A F Schier; D Resendez-Perez; M Affolter; G Otting; K Wüthrich
Journal:  Cell       Date:  1994-07-29       Impact factor: 41.582

8.  The X-ray structure of an atypical homeodomain present in the rat liver transcription factor LFB1/HNF1 and implications for DNA binding.

Authors:  T A Ceska; M Lamers; P Monaci; A Nicosia; R Cortese; D Suck
Journal:  EMBO J       Date:  1993-05       Impact factor: 11.598

9.  Solution structure of the POU-specific DNA-binding domain of Oct-1.

Authors:  N Dekker; M Cox; R Boelens; C P Verrijzer; P C van der Vliet; R Kaptein
Journal:  Nature       Date:  1993-04-29       Impact factor: 49.962

10.  Nuclear magnetic resonance solution structure of the fushi tarazu homeodomain from Drosophila and comparison with the Antennapedia homeodomain.

Authors:  Y Q Qian; K Furukubo-Tokunaga; D Resendez-Perez; M Müller; W J Gehring; K Wüthrich
Journal:  J Mol Biol       Date:  1994-05-06       Impact factor: 5.469
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  6 in total

1.  The Homeodomain Resource: sequences, structures, DNA binding sites and genomic information.

Authors:  S Banerjee-Basu; D W Sink; A D Baxevanis
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Role of conserved salt bridges in homeodomain stability and DNA binding.

Authors:  Mario Torrado; Julia Revuelta; Carlos Gonzalez; Francisco Corzana; Agatha Bastida; Juan Luis Asensio
Journal:  J Biol Chem       Date:  2009-06-26       Impact factor: 5.157

3.  Combinatorial interactions of two amino acids with a single base pair define target site specificity in plant dimeric homeodomain proteins.

Authors:  A E Tron; C W Bertoncini; C M Palena; R L Chan; D H Gonzalez
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

Review 4.  Hox genes and their candidate downstream targets in the developing central nervous system.

Authors:  Z N Akin; A J Nazarali
Journal:  Cell Mol Neurobiol       Date:  2005-06       Impact factor: 5.046

5.  Cellular uptake of Antennapedia Penetratin peptides is a two-step process in which phase transfer precedes a tryptophan-dependent translocation.

Authors:  Geneviève Dom; Chloë Shaw-Jackson; Christelle Matis; Olivier Bouffioux; Jacques J Picard; Alain Prochiantz; Marie-Paule Mingeot-Leclercq; Robert Brasseur; René Rezsohazy
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

6.  Rhombomere-specific analysis reveals the repertoire of genetic cues expressed across the developing hindbrain.

Authors:  David Chambers; Leigh Jane Wilson; Fabienne Alfonsi; Ewan Hunter; Uma Saxena; Eric Blanc; Andrew Lumsden
Journal:  Neural Dev       Date:  2009-02-10       Impact factor: 3.842
  6 in total

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