Literature DB >> 11125111

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites.

R Hershberg1, G Bejerano, A Santos-Zavaleta, H Margalit.   

Abstract

PromEC is an updated compilation of Escherichia coli mRNA promoter sequences. It includes documentation on the location of experimentally identified mRNA transcriptional start sites on the E. coli chromosome, as well as the actual sequences in the promoter region. The database was updated as of July 2000 and includes 472 entries. PromEC is accessible at http://bioinfo.md.huji.ac. il/marg/promec

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Year:  2001        PMID： 11125111      PMCID： PMC29777          DOI： 10.1093/nar/29.1.277

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  3 in total

1.  RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.

Authors:  H Salgado; A Santos-Zavaleta; S Gama-Castro; D Millán-Zárate; F R Blattner; J Collado-Vides
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

3.  Compilation of E. coli mRNA promoter sequences.

Authors:  S Lisser; H Margalit
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971
  3 in total
  27 in total

1.  AraC-XylS database: a family of positive transcriptional regulators in bacteria.

Authors:  Raquel Tobes; Juan L Ramos
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Factors affecting start site selection at the Escherichia coli fis promoter.

Authors:  Kimberly A Walker; Robert Osuna
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

3.  Temperature sensing by the dsrA promoter.

Authors:  F Repoila; S Gottesman
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

4.  Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters.

Authors:  Huiquan Wang; Michiel Noordewier; Craig J Benham
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

5.  SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.

Authors:  Stephan Lacour; Paolo Landini
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

6.  DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli.

Authors:  Prabhat Mallik; Brian J Paul; Steven T Rutherford; Richard L Gourse; Robert Osuna
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

7.  Prediction of small, noncoding RNAs in bacteria using heterogeneous data.

Authors:  Brian Tjaden
Journal:  J Math Biol       Date:  2007-03-13       Impact factor: 2.259

8.  A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo.

Authors:  Leonid V Aseev; Alexandrina A Levandovskaya; Ludmila S Tchufistova; Nadezda V Scaptsova; Irina V Boni
Journal:  RNA       Date:  2008-07-22       Impact factor: 4.942

9.  Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Authors:  Morgan N Price; Adam M Deutschbauer; Jennifer V Kuehl; Haichuan Liu; H Ewa Witkowska; Adam P Arkin
Journal:  J Bacteriol       Date:  2011-08-12       Impact factor: 3.490

10.  Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.

Authors:  Pooja Rawal; Veera Bhadra Rao Kummarasetti; Jinoy Ravindran; Nirmal Kumar; Kangkan Halder; Rakesh Sharma; Mitali Mukerji; Swapan Kumar Das; Shantanu Chowdhury
Journal:  Genome Res       Date:  2006-05       Impact factor: 9.043
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