Literature DB >> 9847148

The FlyBase database of the Drosophila Genome Projects and community literature.

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Abstract

The FlyBase Drosophila genetics database and the public interfaces of the Berkeley Drosophila Genome Project (BDGP) and European Drosophila Genome Project (EDGP) are in the process of integrating. At present, the data of these projects are available from independent, but hyperlinked, WWW sites (FlyBase URL, http://flybase. bio.indiana.edu/; BDGP URL, http://fruitfly.berkeley.edu/; EDGP URL, http://edgp.ebi.ac.uk/ ). Because of the considerable overlap of data classes between the contributions of the Drosophila genome projects and the Drosophila community, the new and enlarged FlyBase consortium views the implementation of a single integrated Drosophila genomics/genetics server as essential to the scientific community. This integration will occur in a stepwise fashion over the next 1-2 years. In this report, the salient features of the current databases and how to interrogate and navigate the extensive data sets are discussed.

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Mesh:

Year:  1999        PMID: 9847148      PMCID: PMC148103          DOI: 10.1093/nar/27.1.85

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  106 in total

1.  The eukaryotic promoter database (EPD).

Authors:  R C Périer; V Praz; T Junier; C Bonnard; P Bucher
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  MEROPS: the peptidase database.

Authors:  N D Rawlings; A J Barrett
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Authors:  J Qian; B Stenger; C A Wilson; J Lin; R Jansen; S A Teichmann; J Park; W G Krebs; H Yu; V Alexandrov; N Echols; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

7.  An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression.

Authors:  H Yue; P S Eastman; B B Wang; J Minor; M H Doctolero; R L Nuttall; R Stack; J W Becker; J R Montgomery; M Vainer; R Johnston
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

8.  The balance between isoforms of the prickle LIM domain protein is critical for planar polarity in Drosophila imaginal discs.

Authors:  D Gubb; C Green; D Huen; D Coulson; G Johnson; D Tree; S Collier; J Roote
Journal:  Genes Dev       Date:  1999-09-01       Impact factor: 11.361

9.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

10.  c(3)G encodes a Drosophila synaptonemal complex protein.

Authors:  S L Page; R S Hawley
Journal:  Genes Dev       Date:  2001-12-01       Impact factor: 11.361

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