Literature DB >> 11104005

Current state of automated crystallographic data analysis.

V S Lamzin1, A Perrakis.   

Abstract

A goal of structural biology--and of structural genomics in particular--is to improve the underlying methodology for high-throughput determination of three-dimensional structures of biological macromolecules. Here we address issues related to the development, automation and streamlining of the process of macromolecular X-ray crystal structure solution.

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Year:  2000        PMID： 11104005     DOI： 10.1038/80763

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


  16 in total

1.  Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.

Authors:  S Korolev; O Koroleva; K Petterson; M Gu; F Collart; I Dementieva; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

2.  MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

Authors:  Angel R Ortiz; Charlie E M Strauss; Osvaldo Olmea
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

3.  Connecting nanoscale images of proteins with their genetic sequences.

Authors:  Brian A Todd; Jayan Rammohan; Steven J Eppell
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

4.  Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.

Authors:  Dennis Pantazatos; Jack S Kim; Heath E Klock; Raymond C Stevens; Ian A Wilson; Scott A Lesley; Virgil L Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

Review 5.  Applications of NMR to structure-based drug design in structural genomics.

Authors:  Robert Powers
Journal:  J Struct Funct Genomics       Date:  2002

6.  Laboratory scale structural genomics.

Authors:  Brent W Segelke; Johana Schafer; Matthew A Coleman; Tim P Lekin; Dominique Toppani; Krzysztof J Skowronek; Katherine A Kantardjieff; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2004

7.  Crystal structure of the response regulator 02 receiver domain, the essential YycF two-component system of Streptococcus pneumoniae in both complexed and native states.

Authors:  Colin J Bent; Neil W Isaacs; Timothy J Mitchell; Alan Riboldi-Tunnicliffe
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490

8.  DNA shuffling as a tool for protein crystallization.

Authors:  Robert J Keenan; Daniel L Siehl; Rebecca Gorton; Linda A Castle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-10       Impact factor: 11.205

Review 9.  The neurobiologist's guide to structural biology: a primer on why macromolecular structure matters and how to evaluate structural data.

Authors:  Daniel L Minor
Journal:  Neuron       Date:  2007-05-24       Impact factor: 17.173

10.  Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.

Authors:  Gerrit Langer; Serge X Cohen; Victor S Lamzin; Anastassis Perrakis
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491
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