Literature DB >> 11104002

Target selection for structural genomics.

S E Brenner1.   

Abstract

Structural genomics aims to use high-throughput structure determination and computational analysis to provide three-dimensional models of every tractable protein. The process of choosing proteins for experimental structure characterization is known as target selection. In this nomenclature, the targets are regions of proteins to be studied by crystallography or NMR. Selection of the targets is principally a computational process of restricting candidate proteins to those that are tractable and of unknown structure, and prioritizing according to expected interest and accessibility.

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Year:  2000        PMID: 11104002     DOI: 10.1038/80747

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  35 in total

Review 1.  Structural genomics: an approach to the protein folding problem.

Authors:  G T Montelione
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

Review 2.  Structural genomics: a pipeline for providing structures for the biologist.

Authors:  Mark R Chance; Anne R Bresnick; Stephen K Burley; Jian-Sheng Jiang; Christopher D Lima; Andrej Sali; Steven C Almo; Jeffrey B Bonanno; John A Buglino; Simon Boulton; Hua Chen; Narayanan Eswar; Guoshun He; Raymond Huang; Valentin Ilyin; Linda McMahan; Ursula Pieper; Soumya Ray; Marc Vidal; Li Kai Wang
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

3.  A global representation of the protein fold space.

Authors:  Jingtong Hou; Gregory E Sims; Chao Zhang; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-26       Impact factor: 11.205

4.  Coverage of protein sequence space by current structural genomics targets.

Authors:  Nicholas O'Toole; Stéphane Raymond; Miroslaw Cygler
Journal:  J Struct Funct Genomics       Date:  2003

5.  GlobPlot: Exploring protein sequences for globularity and disorder.

Authors:  Rune Linding; Robert B Russell; Victor Neduva; Toby J Gibson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Exploring the sequence-structure protein landscape in the glycosyltransferase family.

Authors:  Ziding Zhang; Sunil Kochhar; Martin Grigorov
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

7.  Crystal structure of a novel non-Pfam protein PF2046 solved using low resolution B-factor sharpening and multi-crystal averaging methods.

Authors:  Jing Su; Yang Li; Neil Shaw; Weihong Zhou; Min Zhang; Hao Xu; Bi-Cheng Wang; Zhi-Jie Liu
Journal:  Protein Cell       Date:  2010-06-04       Impact factor: 14.870

8.  Domain view: a web tool for protein domain visualization and analysis.

Authors:  Xiaokang Pan; Craig A Bingman; Gary E Wesenberg; Zhaohui Sun; George N Phillips
Journal:  J Struct Funct Genomics       Date:  2010-10-14

9.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

10.  Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold.

Authors:  Cong-Zhao Zhou; Philippe Meyer; Sophie Quevillon-Cheruel; Inès Li De La Sierra-Gallay; Bruno Collinet; Marc Graille; Karine Blondeau; Jean-Marie François; Nicolas Leulliot; Isabelle Sorel; Anne Poupon; Joel Janin; Herman Van Tilbeurgh
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

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