Literature DB >> 11102127

Adsorption-assisted translocation of a chain molecule through a pore

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Abstract

We analyze the free energy for translocation of a polymer from the outside of a spherical vesicle to the inside. The process is assumed to be driven by the adsorption of the polymer on the inner surface of the vesicle. We argue that in the case where the polymer is adsorbed on the outer surface too, the entropic barrier for translocation is absent. We analyze the adsorption process and find the free energy profile for the translocation. We argue that the motion corresponds to a polymer crossing a region with a change in free energy per segment. Based upon our earlier analysis of the behavior of kinks in such a problem, we conclude that the translocation can occur with a crossing time t(trans) approximately N.

Entities:  

Year:  2000        PMID: 11102127     DOI: 10.1103/physreve.62.7536

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN: 1063-651X


  7 in total

1.  Passage times for polymer translocation pulled through a narrow pore.

Authors:  Debabrata Panja; Gerard T Barkema
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

2.  Molecular Dynamics simulation of a polymer chain translocating through a nanoscopic pore: hydrodynamic interactions versus pore radius.

Authors:  M G Gauthier; G W Slater
Journal:  Eur Phys J E Soft Matter       Date:  2008-01-31       Impact factor: 1.890

3.  Gaussian fluctuations in tethered DNA chains.

Authors:  Shuang-Liang Zhao; Jiamin Wu; Di Gao; Jianzhong Wu
Journal:  J Chem Phys       Date:  2011-02-14       Impact factor: 3.488

4.  Probing single nanometer-scale pores with polymeric molecular rulers.

Authors:  Sarah E Henrickson; Edmund A DiMarzio; Qian Wang; Vincent M Stanford; John J Kasianowicz
Journal:  J Chem Phys       Date:  2010-04-07       Impact factor: 3.488

5.  Electrokinetically-driven transport of DNA through focused ion beam milled nanofluidic channels.

Authors:  Laurent D Menard; J Michael Ramsey
Journal:  Anal Chem       Date:  2012-12-24       Impact factor: 6.986

6.  Translocation of rodlike polymers through membrane channels.

Authors:  A M Berezhkovskii; I V Gopich
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

7.  Electrophoresis in nanochannels: brief review and speculation.

Authors:  Fabio Baldessari; Juan G Santiago
Journal:  J Nanobiotechnology       Date:  2006-11-20       Impact factor: 10.435

  7 in total

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