Literature DB >> 11101596

Genomic and phylogenetic analysis of hepatitis C virus isolates from argentine patients: a six-year retrospective study.

J F Quarleri1, B H Robertson, V L Mathet, M Feld, L Espínola, M P Requeijo, O Mandó, G Carballal, J R Oubiña.   

Abstract

Typing of hepatitis C virus (HCV) isolates from Argentine patients was performed by using different methodologies in a population of 243 patients. HCV subtype was assigned based upon restriction fragment length polymorphism (RFLP). HCV RNA genomes obtained from serum samples were classified as belonging to clade 1 (53.5%), 2 (23. 0%), or 3 (8.6%); 14.8% of samples showed HCV mixed infections, more frequently implying different subtypes within the same clade. In addition to RFLP typing, phylogenetic relatedness among sequences from both 5' untranslated region (n = 50) and nonstructural 5B coding region (n = 15) was established.

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Year:  2000        PMID： 11101596      PMCID： PMC87637     

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  48 in total

1.  Genetic diversity of GBV-C/HGV strains among HIV infected-IVDU and blood donors from Buenos Aires, Argentina.

Authors:  J R Oubiña; V Mathet; M Feld; M P Della Latta; D Ferrario; R Verdun; O Libonatti; J Fernández; G Carballal; D O Sánchez; J F Quarleri
Journal:  Virus Res       Date:  1999-12-15       Impact factor: 3.303

2.  GB virus C/hepatitis G virus groups and subgroups: classification by a restriction fragment length polymorphism method based on phylogenetic analysis of the 5' untranslated region.

Authors:  J F Quarleri; V L Mathet; M Feld; D Ferrario; M P della Latta; R Verdun; D O Sánchez; J R Oubiña
Journal:  J Clin Microbiol       Date:  1999-05       Impact factor: 5.948

3.  Marked sequence diversity in the putative envelope proteins of hepatitis C viruses.

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Journal:  Virus Res       Date:  1992-02       Impact factor: 3.303

4.  Avoiding false positives with PCR.

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Journal:  Nature       Date:  1989-05-18       Impact factor: 49.962

5.  There are two major types of hepatitis C virus in Japan.

Authors:  N Enomoto; A Takada; T Nakao; T Date
Journal:  Biochem Biophys Res Commun       Date:  1990-08-16       Impact factor: 3.575

Review 6.  Quasispecies in viral persistence and pathogenesis of hepatitis C virus.

Authors:  X Forns; R H Purcell; J Bukh
Journal:  Trends Microbiol       Date:  1999-10       Impact factor: 17.079

7.  [Distribution of the genotypes of hepatitis C virus in intravenous drug addicts in Argentina].

Authors:  J A Findor; J A Sordá; J Daruich; E Bruch Igartua; E Manero; A Avagnina; D Benbassat; J Rey; M Nakatsuno
Journal:  Medicina (B Aires)       Date:  1999       Impact factor: 0.653

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  Analysis of a new hepatitis C virus type and its phylogenetic relationship to existing variants.

Authors:  S W Chan; F McOmish; E C Holmes; B Dow; J F Peutherer; E Follett; P L Yap; P Simmonds
Journal:  J Gen Virol       Date:  1992-05       Impact factor: 3.891

10.  Typing hepatitis C virus by polymerase chain reaction with type-specific primers: application to clinical surveys and tracing infectious sources.

Authors:  H Okamoto; Y Sugiyama; S Okada; K Kurai; Y Akahane; Y Sugai; T Tanaka; K Sato; F Tsuda; Y Miyakawa
Journal:  J Gen Virol       Date:  1992-03       Impact factor: 3.891
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1.  Uncommon hepatitis B virus and/or hepatitis C virus occult infection in HIV-positive patients with abnormal level of hepatic enzyme.

Authors:  Natalia Laufer; Lucila Cassino; Federico Bolcic; Franco Moretti; Rita Reynoso; Maria Belen Bouzas; Pedro Cahn; Horacio Salomón; Jorge Quarleri
Journal:  J Acquir Immune Defic Syndr       Date:  2008-10-01       Impact factor: 3.731

2.  Hepatitis C virus infection in infants and children from Argentina.

Authors:  María Inés Gismondi; Estela Inés Turazza; Saúl Grinstein; María Cristina Galoppo; María Victoria Preciado
Journal:  J Clin Microbiol       Date:  2004-03       Impact factor: 5.948

3.  Hepatitis C virus isolates from Argentina disclose a novel genotype 1-associated restriction pattern.

Authors:  María Inés Gismondi; Lothar Heinrich Staendner; Saúl Grinstein; Carlos Alberto Guzmán; María Victoria Preciado
Journal:  J Clin Microbiol       Date:  2004-03       Impact factor: 5.948

4.  Strategic approach to produce low-cost, efficient, and stable competitive internal controls for detection of RNA viruses by use of reverse transcription-PCR.

Authors:  Gabriela V Villanova; Daniela Gardiol; Miguel A Taborda; Virginia Reggiardo; Hugo Tanno; Emilia D Rivadeneira; Germán R Perez; Adriana A Giri
Journal:  J Clin Microbiol       Date:  2007-08-15       Impact factor: 5.948

5.  In vitro detection of dissimilar amounts of hepatitis C virus (HCV) subtype-specific RNA genomes in mixes prepared from sera of persons infected with a single HCV genotype.

Authors:  Jorge F Quarleri; María V Bussy; Verónica L Mathet; Vanesa Ruiz; Rubén Iácono; Ling Lu; Betty H Robertson; José R Oubiña
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

6.  Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina.

Authors:  Noemí del Pino; José Raúl Oubiña; Francisco Rodríguez-Frías; Juan Ignacio Esteban; María Buti; Teresa Otero; Josep Gregori; Damir García-Cehic; Silvia Camos; María Cubero; Rosario Casillas; Jaume Guàrdia; Rafael Esteban; Josep Quer
Journal:  World J Gastroenterol       Date:  2013-09-21       Impact factor: 5.742

7.  Genetic history of hepatitis C virus in Venezuela: high diversity and long time of evolution of HCV genotype 2.

Authors:  Maria Z Sulbarán; Federico A Di Lello; Yoneira Sulbarán; Clarisa Cosson; Carmen L Loureiro; Héctor R Rangel; Jean F Cantaloube; Rodolfo H Campos; Gonzalo Moratorio; Juan Cristina; Flor H Pujol
Journal:  PLoS One       Date:  2010-12-13       Impact factor: 3.240

8.  Phylodynamics of hepatitis C virus subtype 2c in the province of Córdoba, Argentina.

Authors:  Viviana E Ré; Andrés C A Culasso; Silvia Mengarelli; Adrián A Farías; Fabián Fay; María B Pisano; Osvaldo Elbarcha; Marta S Contigiani; Rodolfo H Campos
Journal:  PLoS One       Date:  2011-05-18       Impact factor: 3.240

9.  Phylogenetic Analysis and Epidemic History of Hepatitis C Virus Genotype 2 in Tunisia, North Africa.

Authors:  Mouna Rajhi; Kais Ghedira; Anissa Chouikha; Ahlem Djebbi; Imed Cheikh; Ahlem Ben Yahia; Amel Sadraoui; Walid Hammami; Msaddek Azouz; Nabil Ben Mami; Henda Triki
Journal:  PLoS One       Date:  2016-04-21       Impact factor: 3.240
  9 in total

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