Literature DB >> 11090129

Dual utilization of an acceptor/donor splice site governs the alternative splicing of the IRF-3 gene.

A Y Karpova1, P M Howley, L V Ronco.   

Abstract

Interferon regulatory factors constitute a family of transcriptional activators and repressors involved in a large number of vital cellular processes. Interferon regulatory factor-3 (IRF-3) has been implicated in virus and double-stranded RNA mediated induction of IFNbeta and RANTES, in DNA damage signaling, and in virus-induced apoptosis. With its critical role in these pathways, the activity of IRF-3 is tightly regulated in myriad ways. Here we describe novel regulation of IRF-3 at the level of RNA splicing. We show that an unprecedented dual utilization of a splice acceptor/donor site within the IRF-3 mRNA governs the production of two alternative splice isoforms.

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Year:  2000        PMID: 11090129      PMCID: PMC317057          DOI: 10.1101/gad.813800

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  31 in total

Review 1.  Interferon regulatory factors: the next generation.

Authors:  Y Mamane; C Heylbroeck; P Génin; M Algarté; M J Servant; C LePage; C DeLuca; H Kwon; R Lin; J Hiscott
Journal:  Gene       Date:  1999-09-03       Impact factor: 3.688

2.  A model system for activation-induced alternative splicing of CD45 pre-mRNA in T cells implicates protein kinase C and Ras.

Authors:  K W Lynch; A Weiss
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

Review 3.  Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases.

Authors:  B J Blencowe
Journal:  Trends Biochem Sci       Date:  2000-03       Impact factor: 13.807

Review 4.  Alternative pre-mRNA splicing: the logic of combinatorial control.

Authors:  C W Smith; J Valcárcel
Journal:  Trends Biochem Sci       Date:  2000-08       Impact factor: 13.807

5.  A serine kinase regulates intracellular localization of splicing factors in the cell cycle.

Authors:  J F Gui; W S Lane; X D Fu
Journal:  Nature       Date:  1994-06-23       Impact factor: 49.962

6.  Distinct functions of SR proteins in alternative pre-mRNA splicing.

Authors:  A M Zahler; K M Neugebauer; W S Lane; M B Roth
Journal:  Science       Date:  1993-04-09       Impact factor: 47.728

7.  Activation of interferon regulatory factor 3 in response to DNA-damaging agents.

Authors:  T Kim; T Y Kim; Y H Song; I M Min; J Yim; T K Kim
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

8.  The IRF-3 transcription factor mediates Sendai virus-induced apoptosis.

Authors:  C Heylbroeck; S Balachandran; M J Servant; C DeLuca; G N Barber; R Lin; J Hiscott
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

9.  Accelerated exon skipping of IRF-1 mRNA in human myelodysplasia/leukemia; a possible mechanism of tumor suppressor inactivation.

Authors:  H Harada; T Kondo; S Ogawa; T Tamura; M Kitagawa; N Tanaka; M S Lamphier; H Hirai; T Taniguchi
Journal:  Oncogene       Date:  1994-11       Impact factor: 9.867

10.  Cooperation of 5' and 3' processing sites as well as intron and exon sequences in calcitonin exon recognition.

Authors:  H Zandberg; T C Moen; P D Baas
Journal:  Nucleic Acids Res       Date:  1995-01-25       Impact factor: 16.971

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  16 in total

1.  Genome-wide detection of tissue-specific alternative splicing in the human transcriptome.

Authors:  Qiang Xu; Barmak Modrek; Christopher Lee
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

2.  Protective role of interferon regulatory factor 3-mediated signaling against prion infection.

Authors:  Daisuke Ishibashi; Ryuichiro Atarashi; Takayuki Fuse; Takehiro Nakagaki; Naohiro Yamaguchi; Katsuya Satoh; Kenya Honda; Noriyuki Nishida
Journal:  J Virol       Date:  2012-02-29       Impact factor: 5.103

3.  Interferon regulatory factor 3-CL, an isoform of IRF3, antagonizes activity of IRF3.

Authors:  Chunhua Li; Lixin Ma; Xinwen Chen
Journal:  Cell Mol Immunol       Date:  2010-12-06       Impact factor: 11.530

4.  Functional characterization of interferon regulatory factor 3a (IRF-3a), an alternative splice isoform of IRF-3.

Authors:  A Y Karpova; L V Ronco; P M Howley
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

5.  Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.

Authors:  Theresa Zhang; Peter Haws; Qiang Wu
Journal:  Genome Res       Date:  2003-12-12       Impact factor: 9.043

6.  Specific SR protein-dependent splicing substrates identified through genomic SELEX.

Authors:  Soyoun Kim; Hua Shi; Dong-Ki Lee; John T Lis
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

7.  Manipulation of the toll-like receptor 7 signaling pathway by Epstein-Barr virus.

Authors:  Heather J Martin; Jae Myun Lee; Dermot Walls; S Diane Hayward
Journal:  J Virol       Date:  2007-07-03       Impact factor: 5.103

8.  Dual-specificity splice sites function alternatively as 5' and 3' splice sites.

Authors:  Chaolin Zhang; Michelle L Hastings; Adrian R Krainer; Michael Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-11       Impact factor: 11.205

9.  HnRNP A1/A2 and SF2/ASF regulate alternative splicing of interferon regulatory factor-3 and affect immunomodulatory functions in human non-small cell lung cancer cells.

Authors:  Rong Guo; Yong Li; Jinying Ning; Dan Sun; Lianjun Lin; Xinmin Liu
Journal:  PLoS One       Date:  2013-04-29       Impact factor: 3.240

10.  Protective role of MyD88-independent innate immune responses against prion infection.

Authors:  Daisuke Ishibashi; Ryuichiro Atarashi; Noriyuki Nishida
Journal:  Prion       Date:  2012-10-23       Impact factor: 3.931

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