Literature DB >> 11084900

Protein structure comparison using SAP.

W R Taylor1.   

Abstract

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Year:  2000        PMID： 11084900     DOI： 10.1385/1-59259-368-2:19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


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  15 in total

1.  Further evidence for the likely completeness of the library of solved single domain protein structures.

Authors:  Jeffrey Skolnick; Hongyi Zhou; Michal Brylinski
Journal:  J Phys Chem B       Date:  2012-02-13       Impact factor: 2.991

2.  Consequences of domain insertion on sequence-structure divergence in a superfold.

Authors:  Chetanya Pandya; Shoshana Brown; Ursula Pieper; Andrej Sali; Debra Dunaway-Mariano; Patricia C Babbitt; Yu Xia; Karen N Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

3.  Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy.

Authors:  Marcus Stamm; Lucy R Forrest
Journal:  Proteins       Date:  2015-08-01

4.  Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and function.

Authors:  Michal Brylinski; Mu Gao; Jeffrey Skolnick
Journal:  Phys Chem Chem Phys       Date:  2011-06-08       Impact factor: 3.676

5.  A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives.

Authors:  Julie D Thompson; Benjamin Linard; Odile Lecompte; Olivier Poch
Journal:  PLoS One       Date:  2011-03-31       Impact factor: 3.240

6.  Protein sequence alignment with family-specific amino acid similarity matrices.

Authors:  Igor B Kuznetsov
Journal:  BMC Res Notes       Date:  2011-08-16

7.  S4: structure-based sequence alignments of SCOP superfamilies.

Authors:  James Casbon; Mansoor A S Saqi
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

8.  Quality measures for protein alignment benchmarks.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2010-01-04       Impact factor: 16.971

9.  De novo backbone scaffolds for protein design.

Authors:  James T MacDonald; Katarzyna Maksimiak; Michael I Sadowski; William R Taylor
Journal:  Proteins       Date:  2010-04

10.  Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions.

Authors:  Haiyan Jiang; Christian Blouin
Journal:  BMC Bioinformatics       Date:  2007-11-15       Impact factor: 3.169
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