Literature DB >> 11071950

A simple and reliable 5'-RACE approach.

G Schramm1, I Bruchhaus, T Roeder.   

Abstract

A novel approach for the amplification of cDNA ends is described. It requires only minimal amounts of material, a simple cDNA synthesis reaction and a single PCR reaction to amplify the desired 5'- or 3'-ends of a certain cDNA of interest. It combines the so called CapFinder approach with solid phase cDNA synthesis, thus almost eliminating background problems usually associated with 5'-RACE protocols. This approach could be used to generate complete 5'-ends of numerous cDNAs using only one cDNA synthesis reaction. In combination with LA PCR, several kilobases of unknown 5'-ends could be amplified. It is easy to perform, quick, inexpensive and reliable, which should enable it to replace most currently used 5'-RACE protocols.

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Year:  2000        PMID: 11071950      PMCID: PMC113888          DOI: 10.1093/nar/28.22.e96

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.

Authors:  W M Schmidt; M W Mueller
Journal:  Nucleic Acids Res       Date:  1999-11-01       Impact factor: 16.971

2.  Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.

Authors:  P Liang; A B Pardee
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

3.  Amplification of cDNA ends based on template-switching effect and step-out PCR.

Authors:  M Matz; D Shagin; E Bogdanova; O Britanova; S Lukyanov; L Diatchenko; A Chenchik
Journal:  Nucleic Acids Res       Date:  1999-03-15       Impact factor: 16.971

4.  Solid-phase cDNA library construction, a versatile approach.

Authors:  T Roeder
Journal:  Nucleic Acids Res       Date:  1998-07-15       Impact factor: 16.971

Review 5.  Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends.

Authors:  B C Schaefer
Journal:  Anal Biochem       Date:  1995-05-20       Impact factor: 3.365

6.  A highly sensitive method for mapping the 5' termini of mRNAs.

Authors:  M Fromont-Racine; E Bertrand; R Pictet; T Grange
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

7.  PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates.

Authors:  W M Barnes
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-15       Impact factor: 11.205

  7 in total
  24 in total

1.  Isolation of the 5'-end of plant genes from genomic DNA by TATA-box-based degenerate primers.

Authors:  Yanwu Guo; Lanqing Ma; Yunpeng Ji; Gaobin Pu; Benye Liu; Zhigao Du; Guofeng Li; Hechun Ye; Hong Wang
Journal:  Mol Biotechnol       Date:  2011-02       Impact factor: 2.695

2.  Expression of Hox genes during the larval development of the snail, Gibbula varia (L.)-further evidence of non-colinearity in molluscs.

Authors:  Leyli Samadi; Gerhard Steiner
Journal:  Dev Genes Evol       Date:  2010-10-19       Impact factor: 0.900

3.  Involvement of Hox genes in shell morphogenesis in the encapsulated development of a top shell gastropod (Gibbula varia L.).

Authors:  Leyli Samadi; Gerhard Steiner
Journal:  Dev Genes Evol       Date:  2009-12-01       Impact factor: 0.900

4.  Identification and characterization of a liver stage-specific promoter region of the malaria parasite Plasmodium.

Authors:  Susanne Helm; Christine Lehmann; Andreas Nagel; Rebecca R Stanway; Sebastian Horstmann; Manuel Llinas; Volker T Heussler
Journal:  PLoS One       Date:  2010-10-27       Impact factor: 3.240

5.  Targeted rapid amplification of cDNA ends (T-RACE)--an improved RACE reaction through degradation of non-target sequences.

Authors:  Neil I Bower; Ian A Johnston
Journal:  Nucleic Acids Res       Date:  2010-09-15       Impact factor: 16.971

6.  Conservation of ParaHox genes' function in patterning of the digestive tract of the marine gastropod Gibbula varia.

Authors:  Leyli Samadi; Gerhard Steiner
Journal:  BMC Dev Biol       Date:  2010-07-12       Impact factor: 1.978

7.  Characterization of a sterol carrier protein 2/3-oxoacyl-CoA thiolase from the cotton leafworm (Spodoptera littoralis): a lepidopteran mechanism closer to that in mammals than that in dipterans.

Authors:  Hajime Takeuchi; Jian-Hua Chen; John R Jenkins; Masanori Bun-Ya; Philip C Turner; Huw H Rees
Journal:  Biochem J       Date:  2004-08-15       Impact factor: 3.857

8.  Differential transcription in defined parts of the insect brain: comparative study utilizing Drosophila melanogaster and Schistocerca gregaria.

Authors:  Thomas Roeder; Guido Schramm; Helge Marquardt; Ingo Bussmeyer; Oliver Franz
Journal:  Invert Neurosci       Date:  2004-09-18

9.  A novel horse alpha-defensin: gene transcription, recombinant expression and characterization of the structure and function.

Authors:  Oliver Bruhn; Petra Regenhard; Matthias Michalek; Sven Paul; Christoph Gelhaus; Sascha Jung; Georg Thaller; Rainer Podschun; Matthias Leippe; Joachim Grötzinger; Ernst Kalm
Journal:  Biochem J       Date:  2007-10-15       Impact factor: 3.857

10.  The repertoire of equine intestinal alpha-defensins.

Authors:  Oliver Bruhn; Sven Paul; Jens Tetens; Georg Thaller
Journal:  BMC Genomics       Date:  2009-12-23       Impact factor: 3.969

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