Literature DB >> 11058127

Molecular characterisation of RecQ homologues in Arabidopsis thaliana.

F Hartung1, H Plchová, H Puchta.   

Abstract

Members of the RecQ family of DNA helicases are involved in processes linked to DNA replication, DNA recombination and gene silencing. RecQ homologues of various animals have been described recently. Here, for the first time for plants, we characterised cDNAs of all in all six different RecQ-like proteins that are expressed to different extents in Arabidopsis thaliana. Surprisingly, three of these proteins are small in size [AtRecQl1, AtRecQl2, AtRecQl3-606, 705 and 713 amino acids (aa), respectively], whereas the two bigger proteins result from a duplication event during plant evolution [AtRecQl4A and AtRecQl4B-1150 and 1182 aa, respectively]. Another homologue (AtRecQsim, 858 aa) most probably arose by insertion of an unrelated sequence within its helicase domain. The presence of these homologues demonstrates the conservation of RecQ family functions in higher eukaryotes. We also detected a small gene (AtWRNexo) encoding 285 aa which, being devoid of any RecQ-like helicase domain, reveals a striking homology to the exonuclease domain of human Werner protein, a prominent RecQ helicase of larger size. By means of the two-hybrid assay we were able to detect an interaction between AtWRNexo and AtRecQl2, indicating that activities that reside in a single protein chain in mammals might in plants be complemented in trans.

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Year:  2000        PMID: 11058127      PMCID: PMC113147          DOI: 10.1093/nar/28.21.4275

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  RecQ helicase and topoisomerase III comprise a novel DNA strand passage function: a conserved mechanism for control of DNA recombination.

Authors:  F G Harmon; R J DiGate; S C Kowalczykowski
Journal:  Mol Cell       Date:  1999-05       Impact factor: 17.970

Review 2.  Defending genome integrity during DNA replication: a proposed role for RecQ family helicases.

Authors:  R K Chakraverty; I D Hickson
Journal:  Bioessays       Date:  1999-04       Impact factor: 4.345

Review 3.  Homology-dependent gene silencing in plants and fungi: a number of variations on the same theme.

Authors:  C Cogoni; G Macino
Journal:  Curr Opin Microbiol       Date:  1999-12       Impact factor: 7.934

Review 4.  RecQ family helicases: roles in cancer and aging.

Authors:  J K Karow; L Wu; I D Hickson
Journal:  Curr Opin Genet Dev       Date:  2000-02       Impact factor: 5.578

5.  Intron-exon structures of eukaryotic model organisms.

Authors:  M Deutsch; M Long
Journal:  Nucleic Acids Res       Date:  1999-08-01       Impact factor: 16.971

6.  Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

Authors:  K Mayer; C Schüller; R Wambutt; G Murphy; G Volckaert; T Pohl; A Düsterhöft; W Stiekema; K D Entian; N Terryn; B Harris; W Ansorge; P Brandt; L Grivell; M Rieger; M Weichselgartner; V de Simone; B Obermaier; R Mache; M Müller; M Kreis; M Delseny; P Puigdomenech; M Watson; T Schmidtheini; B Reichert; D Portatelle; M Perez-Alonso; M Boutry; I Bancroft; P Vos; J Hoheisel; W Zimmermann; H Wedler; P Ridley; S A Langham; B McCullagh; L Bilham; J Robben; J Van der Schueren; B Grymonprez; Y J Chuang; F Vandenbussche; M Braeken; I Weltjens; M Voet; I Bastiaens; R Aert; E Defoor; T Weitzenegger; G Bothe; U Ramsperger; H Hilbert; M Braun; E Holzer; A Brandt; S Peters; M van Staveren; W Dirske; P Mooijman; R Klein Lankhorst; M Rose; J Hauf; P Kötter; S Berneiser; S Hempel; M Feldpausch; S Lamberth; H Van den Daele; A De Keyser; C Buysshaert; J Gielen; R Villarroel; R De Clercq; M Van Montagu; J Rogers; A Cronin; M Quail; S Bray-Allen; L Clark; J Doggett; S Hall; M Kay; N Lennard; K McLay; R Mayes; A Pettett; M A Rajandream; M Lyne; V Benes; S Rechmann; D Borkova; H Blöcker; M Scharfe; M Grimm; T H Löhnert; S Dose; M de Haan; A Maarse; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; B Fartmann; K Granderath; D Dauner; A Herzl; S Neumann; A Argiriou; D Vitale; R Liguori; E Piravandi; O Massenet; F Quigley; G Clabauld; A Mündlein; R Felber; S Schnabl; R Hiller; W Schmidt; A Lecharny; S Aubourg; F Chefdor; R Cooke; C Berger; A Montfort; E Casacuberta; T Gibbons; N Weber; M Vandenbol; M Bargues; J Terol; A Torres; A Perez-Perez; B Purnelle; E Bent; S Johnson; D Tacon; T Jesse; L Heijnen; S Schwarz; P Scholler; S Heber; P Francs; C Bielke; D Frishman; D Haase; K Lemcke; H W Mewes; S Stocker; P Zaccaria; M Bevan; R K Wilson; M de la Bastide; K Habermann; L Parnell; N Dedhia; L Gnoj; K Schutz; E Huang; L Spiegel; M Sehkon; J Murray; P Sheet; M Cordes; J Abu-Threideh; T Stoneking; J Kalicki; T Graves; G Harmon; J Edwards; P Latreille; L Courtney; J Cloud; A Abbott; K Scott; D Johnson; P Minx; D Bentley; B Fulton; N Miller; T Greco; K Kemp; J Kramer; L Fulton; E Mardis; M Dante; K Pepin; L Hillier; J Nelson; J Spieth; E Ryan; S Andrews; C Geisel; D Layman; H Du; J Ali; A Berghoff; K Jones; K Drone; M Cotton; C Joshu; B Antonoiu; M Zidanic; C Strong; H Sun; B Lamar; C Yordan; P Ma; J Zhong; R Preston; D Vil; M Shekher; A Matero; R Shah; I K Swaby; A O'Shaughnessy; M Rodriguez; J Hoffmann; S Till; S Granat; N Shohdy; A Hasegawa; A Hameed; M Lodhi; A Johnson; E Chen; M Marra; R Martienssen; W R McCombie
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

7.  Molecular characterisation of two paralogous SPO11 homologues in Arabidopsis thaliana.

Authors:  F Hartung; H Puchta
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

8.  The Werner syndrome gene product co-purifies with the DNA replication complex and interacts with PCNA and topoisomerase I.

Authors:  M Lebel; E A Spillare; C C Harris; P Leder
Journal:  J Biol Chem       Date:  1999-12-31       Impact factor: 5.157

9.  Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase.

Authors:  C Cogoni; G Macino
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

10.  Mutations in RECQL4 cause a subset of cases of Rothmund-Thomson syndrome.

Authors:  S Kitao; A Shimamoto; M Goto; R W Miller; W A Smithson; N M Lindor; Y Furuichi
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

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  31 in total

1.  Intron gain and loss in the evolution of the conserved eukaryotic recombination machinery.

Authors:  Frank Hartung; Frank R Blattner; Holger Puchta
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A.

Authors:  Sheng Cui; Daniele Arosio; Kevin M Doherty; Robert M Brosh; Arturo Falaschi; Alessandro Vindigni
Journal:  Nucleic Acids Res       Date:  2004-04-19       Impact factor: 16.971

Review 3.  RecQ helicases; at the crossroad of genome replication, repair, and recombination.

Authors:  Sarallah Rezazadeh
Journal:  Mol Biol Rep       Date:  2011-09-23       Impact factor: 2.316

4.  Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human.

Authors:  Pavan Umate; Renu Tuteja; Narendra Tuteja
Journal:  Plant Mol Biol       Date:  2010-04-10       Impact factor: 4.076

Review 5.  Mechanisms of RecQ helicases in pathways of DNA metabolism and maintenance of genomic stability.

Authors:  Sudha Sharma; Kevin M Doherty; Robert M Brosh
Journal:  Biochem J       Date:  2006-09-15       Impact factor: 3.857

6.  RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.

Authors:  Anja Mannuss; Stefanie Dukowic-Schulze; Stefanie Suer; Frank Hartung; Michael Pacher; Holger Puchta
Journal:  Plant Cell       Date:  2010-10-22       Impact factor: 11.277

7.  Identification of putative Arabidopsis DEMETER target genes by GeneChip analysis.

Authors:  Hyonhwa Ohr; Anhthu Q Bui; Brandon H Le; Robert L Fischer; Yeonhee Choi
Journal:  Biochem Biophys Res Commun       Date:  2007-10-25       Impact factor: 3.575

8.  Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis.

Authors:  Jitendra Kumar Thakur; Pinky Agarwal; Swarup Parida; Deepak Bajaj; Richa Pasrija
Journal:  Mol Genet Genomics       Date:  2013-06-12       Impact factor: 3.291

9.  LSD1-LIKE1-Mediated H3K4me2 Demethylation Is Required for Homologous Recombination Repair.

Authors:  Takeshi Hirakawa; Keiko Kuwata; Maria E Gallego; Charles I White; Mika Nomoto; Yasuomi Tada; Sachihiro Matsunaga
Journal:  Plant Physiol       Date:  2019-07-31       Impact factor: 8.340

10.  Genome-wide comprehensive analysis of human helicases.

Authors:  Pavan Umate; Narendra Tuteja; Renu Tuteja
Journal:  Commun Integr Biol       Date:  2011-01
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