Literature DB >> 11055962

Phylogenetic analysis of and oligonucleotide probe development for eikelboom type 021N filamentous bacteria isolated from bulking activated sludge.

T Kanagawa1, Y Kamagata, S Aruga, T Kohno, M Horn, M Wagner.   

Abstract

Fifteen filamentous strains, morphologically classified as Eikelboom type 021N bacteria, were isolated from bulking activated sludges. Based on comparative 16S ribosomal DNA (rDNA) sequence analysis, all strains form a monophyletic cluster together with all recognized Thiothrix species (88.3 to 98.7% 16S rDNA sequence similarity) within the gamma-subclass of Proteobacteria. The investigated Eikelboom type 021N isolates were subdivided into three distinct groups (I to III) demonstrating a previously unrecognized genetic diversity hidden behind the uniform morphology of the filaments. For in situ detection of these bacteria, 16S rRNA-targeted oligonucleotide probes specific for the entire Eikelboom type 021N-Thiothrix cluster and the Eikelboom type 021N groups I, II, and III, respectively, were designed, evaluated, and successfully applied in activated sludge.

Entities:  

Mesh：

Substances：

Year:  2000        PMID： 11055962      PMCID： PMC92418          DOI： 10.1128/AEM.66.11.5043-5052.2000

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  12 in total

1.  The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

Authors:  H Daims; A Brühl; R Amann; K H Schleifer; M Wagner
Journal:  Syst Appl Microbiol       Date:  1999-09       Impact factor: 4.022

2.  Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification.

Authors:  A Hiraishi
Journal:  Lett Appl Microbiol       Date:  1992-11       Impact factor: 2.858

3.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Authors:  R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

4.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

5.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

Authors:  J Brosius; T J Dull; D D Sleeter; H F Noller
Journal:  J Mol Biol       Date:  1981-05-15       Impact factor: 5.469

8.  Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix spp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. nov.

Authors:  R Howarth; R F Unz; E M Seviour; R J Seviour; L L Blackall; R W Pickup; J G Jones; J Yaguchi; I M Head
Journal:  Int J Syst Bacteriol       Date:  1999-10

9.  Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.

Authors:  N Lee; P H Nielsen; K H Andreasen; S Juretschko; J L Nielsen; K H Schleifer; M Wagner
Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

10.  Filamentous sulfur bacteria of activated sludge: characterization of Thiothrix, Beggiatoa, and Eikelboom type 021N strains.

Authors:  T M Williams; R F Unz
Journal:  Appl Environ Microbiol       Date:  1985-04       Impact factor: 4.792
View more
  15 in total

1.  Identification of a gene essential for sheathed structure formation in Sphaerotilus natans, a filamentous sheathed bacterium.

Authors:  Toshihiko Suzuki; Takahiro Kanagawa; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

2.  Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs.

Authors:  Annette Summers Engel; Natuschka Lee; Megan L Porter; Libby A Stern; Philip C Bennett; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

3.  Novel epibiotic thiothrix bacterium on a marine amphipod.

Authors:  David C Gillan; Nicole Dubilier
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

4.  Repetitive extragenic palindromic PCR (REP-PCR) as a method used for bulking process detection in activated sludge.

Authors:  Dagna Sołtysik; Ilona Bednarek; Tomasz Loch; Sabina Gałka; Daniel Sypniewski
Journal:  Environ Monit Assess       Date:  2010-07-16       Impact factor: 2.513

5.  Novel, attached, sulfur-oxidizing bacteria at shallow hydrothermal vents possess vacuoles not involved in respiratory nitrate accumulation.

Authors:  Karen M Kalanetra; Sherry L Huston; Douglas C Nelson
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

6.  Microbial diversity within early-stage cultured Panulirus ornatus phyllosomas.

Authors:  Matthew S Payne; Mike R Hall; Lindsay Sly; David G Bourne
Journal:  Appl Environ Microbiol       Date:  2007-01-12       Impact factor: 4.792

7.  Dissimilatory iodate reduction by marine Pseudomonas sp. strain SCT.

Authors:  Seigo Amachi; Nahito Kawaguchi; Yasuyuki Muramatsu; Satoshi Tsuchiya; Yuko Watanabe; Hirofumi Shinoyama; Takaaki Fujii
Journal:  Appl Environ Microbiol       Date:  2007-07-20       Impact factor: 4.792

Review 8.  Quantitative image analysis for the characterization of microbial aggregates in biological wastewater treatment: a review.

Authors:  J C Costa; D P Mesquita; A L Amaral; M M Alves; E C Ferreira
Journal:  Environ Sci Pollut Res Int       Date:  2013-05-29       Impact factor: 4.223

9.  Succession of sulfur-oxidizing bacteria in the microbial community on corroding concrete in sewer systems.

Authors:  Satoshi Okabe; Mitsunori Odagiri; Tsukasa Ito; Hisashi Satoh
Journal:  Appl Environ Microbiol       Date:  2006-12-01       Impact factor: 4.792

10.  Sequence-specific cleavage of small-subunit (SSU) rRNA with oligonucleotides and RNase H: a rapid and simple approach to SSU rRNA-based quantitative detection of microorganisms.

Authors:  Yutaka Uyeno; Yuji Sekiguchi; Akiko Sunaga; Hiroki Yoshida; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.