Literature DB >> 11053393

Sequence of the genome of Salmonella bacteriophage P22.

C Vander Byl1, A M Kropinski.   

Abstract

The sequence of the nonredundant region of the Salmonella enterica serovar Typhimurium temperate, serotype-converting bacteriophage P22 has been completed. The genome is 41,724 bp with an overall moles percent GC content of 47.1%. Numerous examples of potential integration host factor and C1-binding sites were identified in the sequence. In addition, five potential rho-independent terminators were discovered. Sixty-five genes were identified and annotated. While many of these had been described previously, we have added several new ones, including the genes involved in serotype conversion and late control. Two of the serotype conversion gene products show considerable sequence relatedness to GtrA and -B from Shigella phages SfII, SfV, and SfX. We have cloned the serotype-converting cassette (gtrABC) and demonstrated that it results in Salmonella serovar Typhimurium LT2 cells which express antigen O1. Many of the putative proteins show sequence relatedness to proteins from a great variety of other phages, supporting the hypothesis that this phage has evolved through the recombinational exchange of genetic information with other viruses.

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Year:  2000        PMID: 11053393      PMCID: PMC94795          DOI: 10.1128/JB.182.22.6472-6481.2000

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  70 in total

1.  Molecular characterization and module composition of P22-related Salmonella phage genomes.

Authors:  P Schicklmaier; T Wieland; H Schmieger
Journal:  J Biotechnol       Date:  1999-08-20       Impact factor: 3.307

2.  Serotype 1a O-antigen modification: molecular characterization of the genes involved and their novel organization in the Shigella flexneri chromosome.

Authors:  P Adhikari; G Allison; B Whittle; N K Verma
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

4.  Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them.

Authors:  V Brendel; G H Hamm; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  1986-02

5.  Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF).

Authors:  J A Goodrich; M L Schwartz; W R McClure
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

6.  Transfer RNA genes and their significance to codon usage in the Pseudomonas aeruginosa lamboid bacteriophage D3.

Authors:  A M Kropinski; M J Sibbald
Journal:  Can J Microbiol       Date:  1999-09       Impact factor: 2.419

7.  Functional analysis of the O antigen glucosylation gene cluster of Shigella flexneri bacteriophage SfX.

Authors:  Shukui Guan; David A Bastin; Naresh K Verma
Journal:  Microbiology       Date:  1999-05       Impact factor: 2.777

8.  Isolation and characterization of APSE-1, a bacteriophage infecting the secondary endosymbiont of Acyrthosiphon pisum.

Authors:  F van der Wilk; A M Dullemans; M Verbeek; J F van den Heuvel
Journal:  Virology       Date:  1999-09-15       Impact factor: 3.616

9.  The isolation and sequence of missense and nonsense mutations in the cloned bacteriophage P22 tailspike protein gene.

Authors:  J J Schwarz; P B Berget
Journal:  Genetics       Date:  1989-04       Impact factor: 4.562

10.  Rapid mapping in Salmonella typhimurium with Mud-P22 prophages.

Authors:  N R Benson; B S Goldman
Journal:  J Bacteriol       Date:  1992-03       Impact factor: 3.490

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  48 in total

1.  Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages.

Authors:  Feng Chen; Jingrang Lu
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  The nucleotide sequence of Shiga toxin (Stx) 2e-encoding phage phiP27 is not related to other Stx phage genomes, but the modular genetic structure is conserved.

Authors:  Jürgen Recktenwald; Herbert Schmidt
Journal:  Infect Immun       Date:  2002-04       Impact factor: 3.441

3.  Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches.

Authors:  Jeffrey G Lawrence; Graham F Hatfull; Roger W Hendrix
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

4.  A P22 scaffold protein mutation increases the robustness of head assembly in the presence of excess portal protein.

Authors:  Sean D Moore; Peter E Prevelige
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

5.  The Phage Proteomic Tree: a genome-based taxonomy for phage.

Authors:  Forest Rohwer; Rob Edwards
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

Review 6.  Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion.

Authors:  Harald Brüssow; Carlos Canchaya; Wolf-Dietrich Hardt
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

7.  Molecular characterization of a prophage of Salmonella enterica serotype Typhimurium DT104.

Authors:  Kiyoshi Tanaka; Kei Nishimori; Sou-Ichi Makino; Tomoko Nishimori; Toru Kanno; Ryoko Ishihara; Toshiya Sameshima; Masato Akiba; Muneo Nakazawa; Yuichi Yokomizo; Ikuo Uchida
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

8.  Whole-genome analysis of Salmonella enterica serovar Typhimurium T000240 reveals the acquisition of a genomic island involved in multidrug resistance via IS1 derivatives on the chromosome.

Authors:  Hidemasa Izumiya; Tsuyoshi Sekizuka; Hideo Nakaya; Masumi Taguchi; Akio Oguchi; Natsuko Ichikawa; Rika Nishiko; Shuji Yamazaki; Nobuyuki Fujita; Haruo Watanabe; Makoto Ohnishi; Makoto Kuroda
Journal:  Antimicrob Agents Chemother       Date:  2010-11-22       Impact factor: 5.191

9.  Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds.

Authors:  Christian G Roessler; Branwen M Hall; William J Anderson; Wendy M Ingram; Sue A Roberts; William R Montfort; Matthew H J Cordes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-28       Impact factor: 11.205

10.  Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar typhimurium reveals phage-type- specific markers and potential for microarray typing.

Authors:  Honghua Hu; Ruiting Lan; Peter R Reeves
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

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