Literature DB >> 11051562

Proximal ligand control of heme iron coordination structure and reactivity with hydrogen peroxide: investigations of the myoglobin cavity mutant H93G with unnatural oxygen donor proximal ligands.

M P Roach1, W J Puspita, Y Watanabe.   

Abstract

The role of the proximal heme iron ligand in activation of hydrogen peroxide and control of spin state and coordination number in heme proteins is not yet well understood. Although there are several examples of amino acid sidechains with oxygen atoms which can act as potential heme iron ligands, the occurrence of protein-derived oxygen donor ligation in natural protein systems is quite rare. The sperm whale myoglobin cavity mutant H93G Mb (D. Barrick, Biochemistry 33 (1994) 6546) has its proximal histidine ligand replaced by glycine, a mutation which leaves an open cavity capable of accommodation of a variety of unnatural potential proximal ligands. This provides a convenient system for studying ligand-protein interactions. Molecular modeling of the proximal cavity in the active site of H93G Mb indicates that the cavity is of sufficient size to accommodate benzoate and phenolate in conformations that allow their oxygen atoms to come within binding distance of the heme iron. In addition, benzoate may occupy the cavity in an orientation which allows one carboxylate oxygen atom to ligate to the heme iron while the other carboxylate oxygen is within hydrogen bonding distance of serine 92. The ferric phenolate and benzoate complexes have been prepared and characterized by UV-visible and MCD spectroscopies. The benzoate adduct shows characteristics of a six-coordinate high-spin complex. To our knowledge, this is the first known example of a six-coordinate high-spin heme complex with an anionic oxygen donor proximal ligand. The benzoate ligand is displaced at alkaline pH and upon reaction with hydrogen peroxide. The phenolate adduct of H93G Mb is a five-coordinate high-spin complex whose UV-visible and MCD spectra are distinct from those of the histidine 93 to tyrosine (H93Y Mb) mutant of sperm whale myoglobin. The phenolate adduct is stable at alkaline pH and exhibits a reduced reactivity with hydrogen peroxide relative to that of both native ferric myoglobin, and the exogenous ligand-free derivative of ferric H93G Mb. These observations indicate that the identity of the proximal oxygen donor ligand has an important influence on both the heme iron coordination number and the reactivity of the complex with hydrogen peroxide.

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Year:  2000        PMID: 11051562     DOI: 10.1016/s0162-0134(00)00101-x

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  6 in total

1.  The H93G Myoglobin Cavity Mutant as a Versatile Scaffold for Modeling Heme Iron Coordination Structures in Protein Active Sites and Their Characterization with Magnetic Circular Dichroism Spectroscopy.

Authors:  Jing Du; Masanori Sono; John H Dawson
Journal:  Coord Chem Rev       Date:  2011-04-01       Impact factor: 22.315

2.  Spectroscopic and biochemical characterization of heme binding to yeast Dap1p and mouse PGRMC1p.

Authors:  Kaushik Ghosh; Alisha M Thompson; Robert A Goldbeck; Xiaoli Shi; Stephanie Whitman; Eric Oh; Zhu Zhiwu; Chris Vulpe; Theodore R Holman
Journal:  Biochemistry       Date:  2005-12-20       Impact factor: 3.162

3.  Significantly enhanced heme retention ability of myoglobin engineered to mimic the third covalent linkage by nonaxial histidine to heme (vinyl) in synechocystis hemoglobin.

Authors:  Sheetal Uppal; Shikha Salhotra; Nitika Mukhi; Fatima Kamal Zaidi; Manas Seal; Somdatta Ghosh Dey; Rajiv Bhat; Suman Kundu
Journal:  J Biol Chem       Date:  2014-12-01       Impact factor: 5.157

4.  Molecular basis for the inability of an oxygen atom donor ligand to replace the natural sulfur donor heme axial ligand in cytochrome P450 catalysis. Spectroscopic characterization of the Cys436Ser CYP2B4 mutant.

Authors:  Roshan Perera; Masanori Sono; Heather L Voegtle; John H Dawson
Journal:  Arch Biochem Biophys       Date:  2010-12-11       Impact factor: 4.013

5.  Structures of thiolate- and carboxylate-ligated ferric H93G myoglobin: models for cytochrome P450 and for oxyanion-bound heme proteins.

Authors:  Jie Qin; Roshan Perera; Leslie L Lovelace; John H Dawson; Lukasz Lebioda
Journal:  Biochemistry       Date:  2006-03-14       Impact factor: 3.162

6.  Complex of myoglobin with phenol bound in a proximal cavity.

Authors:  Xiao Huang; Chunxue Wang; Lesa R Celeste; Leslie L Lovelace; Shenfang Sun; John H Dawson; Lukasz Lebioda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-19
  6 in total

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