Literature DB >> 11050322

Analysing uncharted transcriptomes with SAGE.

V E Velculescu1, B Vogelstein, K W Kinzler.   

Abstract

Methods of comprehensive gene expression analysis have traditionally been limited to analysing bulk tissue or millions of cells. New modifications of serial analysis of gene expression (SAGE) have now permitted the analysis of gene expression in cell subpopulations or microanatomic structures, providing access to unexplored transcriptomes of normal and disease biology.

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Year:  2000        PMID： 11050322     DOI： 10.1016/s0168-9525(00)02114-4

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  40 in total

Review 1.  Genome informatics: current status and future prospects.

Authors:  Raimond L Winslow; Mark S Boguski
Journal:  Circ Res       Date:  2003-05-16       Impact factor: 17.367

Review 2.  Using genomic databases for sequence-based biological discovery.

Authors:  Andreas D Baxevanis
Journal:  Mol Med       Date:  2003 Sep-Dec       Impact factor: 6.354

3.  Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.

Authors:  Austin P So; Robin F B Turner; Charles A Haynes
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

4.  The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Authors:  Blake C Meyers; Shivakundan Singh Tej; Tam H Vu; Christian D Haudenschild; Vikas Agrawal; Steve B Edberg; Hassan Ghazal; Shannon Decola
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

5.  A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

Authors:  Asim S Siddiqui; Jaswinder Khattra; Allen D Delaney; Yongjun Zhao; Caroline Astell; Jennifer Asano; Ryan Babakaiff; Sarah Barber; Jaclyn Beland; Slavita Bohacec; Mabel Brown-John; Steve Chand; David Charest; Anita M Charters; Rebecca Cullum; Noreen Dhalla; Ruth Featherstone; Daniela S Gerhard; Brad Hoffman; Robert A Holt; Juan Hou; Byron Y-L Kuo; Lisa L C Lee; Stephanie Lee; Derek Leung; Kevin Ma; Corey Matsuo; Michael Mayo; Helen McDonald; Anna-liisa Prabhu; Pawan Pandoh; Gregory J Riggins; Teresa Ruiz de Algara; James L Rupert; Duane Smailus; Jeff Stott; Miranda Tsai; Richard Varhol; Pavle Vrljicak; David Wong; Mona K Wu; Yuan-Yun Xie; George Yang; Ida Zhang; Martin Hirst; Steven J M Jones; Cheryl D Helgason; Elizabeth M Simpson; Pamela A Hoodless; Marco A Marra
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-13       Impact factor: 11.205

Review 6.  Unraveling the dynamic transcriptome.

Authors:  Siobhan M Brady; Terri A Long; Philip N Benfey
Journal:  Plant Cell       Date:  2006-09       Impact factor: 11.277

7.  Profiling Schistosoma mansoni development using serial analysis of gene expression (SAGE).

Authors:  David L Williams; Ahmed A Sayed; Jeremiah Bernier; Shanda R Birkeland; Michael J Cipriano; Alexandria R Papa; Andrew G McArthur; Andrew Taft; Jon J Vermeire; Timothy P Yoshino
Journal:  Exp Parasitol       Date:  2007-05-13       Impact factor: 2.011

8.  Gene expression profiling of human breast tissue samples using SAGE-Seq.

Authors:  Zhenhua Jeremy Wu; Clifford A Meyer; Sibgat Choudhury; Michail Shipitsin; Reo Maruyama; Marina Bessarabova; Tatiana Nikolskaya; Saraswati Sukumar; Armin Schwartzman; Jun S Liu; Kornelia Polyak; X Shirley Liu
Journal:  Genome Res       Date:  2010-11-02       Impact factor: 9.043

9.  Acquired expression of periostin by human breast cancers promotes tumor angiogenesis through up-regulation of vascular endothelial growth factor receptor 2 expression.

Authors:  Rong Shao; Shideng Bao; Xuefang Bai; Carrie Blanchette; Ryan M Anderson; Tongyun Dang; Mikhail L Gishizky; Jeffrey R Marks; Xiao-Fan Wang
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

10.  Serial analysis of gene expression reveals differential expression between endometriosis and normal endometrium. Possible roles for AXL and SHC1 in the pathogenesis of endometriosis.

Authors:  Hiroshi Honda; Fermin F Barrueto; Jean Gogusev; Dwight D Im; Patrice J Morin
Journal:  Reprod Biol Endocrinol       Date:  2008-12-02       Impact factor: 5.211
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