Literature DB >> 12750305

Genome informatics: current status and future prospects.

Raimond L Winslow1, Mark S Boguski.   

Abstract

This article reviews recent advances in genomics and informatics relevant to cardiovascular research. In particular, we review the status of (1) whole genome sequencing efforts in human, mouse, rat, zebrafish, and dog; (2) the development of data mining and analysis tools; (3) the launching of the National Heart, Lung, and Blood Institute Programs for Genomics Applications and Proteomics Initiative; (4) efforts to characterize the cardiac transcriptome and proteome; and (5) the current status of computational modeling of the cardiac myocyte. In each instance, we provide links to relevant sources of information on the World Wide Web and critical appraisals of the promises and the challenges of an expanding and diverse information landscape.

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Year:  2003        PMID: 12750305      PMCID: PMC1237016          DOI: 10.1161/01.RES.0000072475.04373.07

Source DB:  PubMed          Journal:  Circ Res        ISSN: 0009-7330            Impact factor:   17.367


  80 in total

1.  Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia.

Authors:  C E Clancy; Y Rudy
Journal:  Nature       Date:  1999-08-05       Impact factor: 49.962

2.  Altered patterns of gene expression in response to myocardial infarction.

Authors:  L W Stanton; L J Garrard; D Damm; B L Garrick; A Lam; A M Kapoun; Q Zheng; A A Protter; G F Schreiner; R T White
Journal:  Circ Res       Date:  2000-05-12       Impact factor: 17.367

3.  Role of the calcium-independent transient outward current I(to1) in shaping action potential morphology and duration.

Authors:  J L Greenstein; R Wu; S Po; G F Tomaselli; R L Winslow
Journal:  Circ Res       Date:  2000-11-24       Impact factor: 17.367

Review 4.  Alternative pre-mRNA splicing and proteome expansion in metazoans.

Authors:  Tom Maniatis; Bosiljka Tasic
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

5.  Cardiac action and pacemaker potentials based on the Hodgkin-Huxley equations.

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Journal:  Nature       Date:  1960-11-05       Impact factor: 49.962

6.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

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Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

7.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

8.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

9.  Global gene expression profiling of end-stage dilated cardiomyopathy using a human cardiovascular-based cDNA microarray.

Authors:  J David Barrans; Paul D Allen; Dimitrios Stamatiou; Victor J Dzau; Choong-Chin Liew
Journal:  Am J Pathol       Date:  2002-06       Impact factor: 4.307

Review 10.  SWISS-PROT: connecting biomolecular knowledge via a protein database.

Authors:  E Gasteiger; E Jung; A Bairoch
Journal:  Curr Issues Mol Biol       Date:  2001-07       Impact factor: 2.081

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  6 in total

1.  Systems biology in heart diseases.

Authors:  G E Louridas; I E Kanonidis; K G Lourida
Journal:  Hippokratia       Date:  2010-01       Impact factor: 0.471

Review 2.  Data mining through simulation.

Authors:  William W Lytton; Mark Stewart
Journal:  Methods Mol Biol       Date:  2007

Review 3.  Genomics, proteomics and bioinformatics of human heart failure.

Authors:  C G Dos Remedios; C C Liew; P D Allen; R L Winslow; J E Van Eyk; M J Dunn
Journal:  J Muscle Res Cell Motil       Date:  2003       Impact factor: 2.698

4.  Mutual information for testing gene-environment interaction.

Authors:  Xuesen Wu; Li Jin; Momiao Xiong
Journal:  PLoS One       Date:  2009-02-24       Impact factor: 3.240

5.  Application of proteomics for the identification of biomarkers in amniotic fluid: are we ready to provide a reliable prediction?

Authors:  George Th Tsangaris; Athanasios K Anagnostopoulos; Georgia Tounta; Aris Antsaklis; Ariadni Mavrou; Aggeliki Kolialexi
Journal:  EPMA J       Date:  2011-06-19       Impact factor: 6.543

6.  Evidence for existence of thirty hypothetical proteins in rat brain.

Authors:  Joo-Ho Shin; Jae-Won Yang; Jean-François Juranville; Michael Fountoulakis; Gert Lubec
Journal:  Proteome Sci       Date:  2004-01-30       Impact factor: 2.480

  6 in total

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