Literature DB >> 11010914

Microscale diversity of the genus Nitrobacter in soil on the basis of analysis of genes encoding rRNA.

G L Grundmann1, P Normand.   

Abstract

We looked at the diversity of [NO(2)](-) oxidizers at field scale by examining isolates at clump scale and in microsamples of soil (diameter, 50 microm). The genetic distances (as determined by amplified ribosomal DNA restriction analysis performed with Nitrobacter-specific primers) in a small clump of soil were as large as those between reference strains from large geographical areas. Diversity in individual microsamples was shown by serotyping.

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Substances：

Year:  2000        PMID： 11010914      PMCID： PMC92340          DOI： 10.1128/AEM.66.10.4543-4546.2000

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  13 in total

1.  Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil.

Authors:  K Nüsslein; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  High-resolution phylogenetic analysis of NO2--oxidizing Nitrobacter species using the rrs-rrl IGS sequence and rrl genes.

Authors:  G L Grundmann; M Neyra; P Normand
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

3.  Use of subtractive hybridization to design habitat-based oligonucleotide probes for investigation of natural bacterial communities.

Authors:  M Mau; K N Timmis
Journal:  Appl Environ Microbiol       Date:  1998-01       Impact factor: 4.792

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Isolation of ammonia-oxidizing autotrophic bacteria.

Authors:  S Soriano; N Walker
Journal:  J Appl Bacteriol       Date:  1968-12

6.  How clonal are bacteria?

Authors:  J M Smith; N H Smith; M O'Rourke; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

Review 7.  The physical environment in soil microbiology: an attempt to extend principles of microbiology to soil microoganisms.

Authors:  T Hattori; R Hattori
Journal:  CRC Crit Rev Microbiol       Date:  1976-05

8.  Genetic diversity among Frankia strains nodulating members of the family Casuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules.

Authors:  C Rouvier; Y Prin; P Reddell; P Normand; P Simonet
Journal:  Appl Environ Microbiol       Date:  1996-03       Impact factor: 4.792

9.  Molecular phylogenetic analysis of Nitrobacter spp.

Authors:  S Orso; M Gouy; E Navarro; P Normand
Journal:  Int J Syst Bacteriol       Date:  1994-01

10.  Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex?

Authors:  V Souza; T T Nguyen; R R Hudson; D Piñero; R E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205
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  14 in total

1.  Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil.

Authors:  J Vogel; P Normand; J Thioulouse; X Nesme; G L Grundmann
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

Review 2.  Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.

Authors:  Cindy E Morris; Marc Bardin; Odile Berge; Pascale Frey-Klett; Nathalie Fromin; Hélène Girardin; Marie-Hélène Guinebretière; Philippe Lebaron; Jean M Thiéry; Marc Troussellier
Journal:  Microbiol Mol Biol Rev       Date:  2002-12       Impact factor: 11.056

3.  Spatial analysis of archaeal community structure in grassland soil.

Authors:  Graeme W Nicol; L Anne Glover; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

Review 4.  An ecological perspective on bacterial biodiversity.

Authors:  M Claire Horner-Devine; Karen M Carney; Brendan J M Bohannan
Journal:  Proc Biol Sci       Date:  2004-01-22       Impact factor: 5.349

5.  Spatial variation in Streptomyces genetic composition and diversity in a prairie soil.

Authors:  A L Davelos; K Xiao; D A Samac; A P Martin; L L Kinkel
Journal:  Microb Ecol       Date:  2004-10-28       Impact factor: 4.552

6.  Distribution of extensive nifH gene diversity across physical soil microenvironments.

Authors:  Javier A Izquierdo; Klaus Nüsslein
Journal:  Microb Ecol       Date:  2006-04-28       Impact factor: 4.552

7.  Forest floor bacterial community composition and catabolic profiles in relation to landscape features in Québec's southern boreal forest.

Authors:  Josyanne Lamarche; Robert L Bradley; Elaine Hooper; Bill Shipley; Anne-Marie Simao Beaunoir; Carole Beaulieu
Journal:  Microb Ecol       Date:  2007-05-18       Impact factor: 4.552

8.  Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil.

Authors:  Joanna M Becker; Tim Parkin; Cindy H Nakatsu; Jayson D Wilbur; Allan Konopka
Journal:  Microb Ecol       Date:  2006-02-10       Impact factor: 4.552

9.  Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation.

Authors:  Boris Nowka; Holger Daims; Eva Spieck
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

10.  Bacterial succession in a glacier foreland of the High Arctic.

Authors:  Ursel M E Schütte; Zaid Abdo; Stephen J Bent; Christopher J Williams; G Maria Schneider; Bjørn Solheim; Larry J Forney
Journal:  ISME J       Date:  2009-07-09       Impact factor: 10.302
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