Literature DB >> 10998380

Microbial genomics: from sequence to function.

I Schwartz1.   

Abstract

The era of genomics (the study of genes and their function) began a scant dozen years ago with a suggestion by James Watson that the complete DNA sequence of the human genome be determined. Since that time, the human genome project has attracted a great deal of attention in the scientific world and the general media; the scope of the sequencing effort, and the extraordinary value that it will provide, has served to mask the enormous progress in sequencing other genomes. Microbial genome sequencing, of particular interest to the community studying emerging infectious diseases, prompted the series of articles presented in the following pages. These articles review technological and scientific advances that have occurred since publication of the Haemophilus influenzae genome sequence in July 1995; that was the first demonstration that an entire genome sequence could be deciphered by a "shotgun" approach, i.e., the sequencing and assembly of random fragments of the genome. This is now the method of choice for sequencing of most other genomes, including human (as performed by Celera Genomics).

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Year:  2000        PMID: 10998380      PMCID: PMC2627950          DOI: 10.3201/eid0605.000508

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN: 1080-6040            Impact factor:   6.883


  10 in total

Review 1.  Phylogenetic classification and the universal tree.

Authors:  W F Doolittle
Journal:  Science       Date:  1999-06-25       Impact factor: 47.728

Review 2.  Mass spectrometry. From genomics to proteomics.

Authors:  J R Yates
Journal:  Trends Genet       Date:  2000-01       Impact factor: 11.639

3.  Lateral genomics.

Authors:  W F Doolittle
Journal:  Trends Cell Biol       Date:  1999-12       Impact factor: 20.808

4.  A biochemical genomics approach for identifying genes by the activity of their products.

Authors:  M R Martzen; S M McCraith; S L Spinelli; F M Torres; S Fields; E J Grayhack; E M Phizicky
Journal:  Science       Date:  1999-11-05       Impact factor: 47.728

Review 5.  Proteomics: quantitative and physical mapping of cellular proteins.

Authors:  W P Blackstock; M P Weir
Journal:  Trends Biotechnol       Date:  1999-03       Impact factor: 19.536

6.  Proteome analysis of Bacillus subtilis extracellular proteins: a two-dimensional protein electrophoretic study.

Authors:  I Hirose; K Sano; I Shioda; M Kumano; K Nakamura; K Yamane
Journal:  Microbiology       Date:  2000-01       Impact factor: 2.777

Review 7.  From genomics to vaccines: malaria as a model system.

Authors:  S L Hoffman; W O Rogers; D J Carucci; J C Venter
Journal:  Nat Med       Date:  1998-12       Impact factor: 53.440

8.  Non-orthologous gene displacement.

Authors:  E V Koonin; A R Mushegian; P Bork
Journal:  Trends Genet       Date:  1996-09       Impact factor: 11.639

9.  Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.

Authors:  M Pizza; V Scarlato; V Masignani; M M Giuliani; B Aricò; M Comanducci; G T Jennings; L Baldi; E Bartolini; B Capecchi; C L Galeotti; E Luzzi; R Manetti; E Marchetti; M Mora; S Nuti; G Ratti; L Santini; S Savino; M Scarselli; E Storni; P Zuo; M Broeker; E Hundt; B Knapp; E Blair; T Mason; H Tettelin; D W Hood; A C Jeffries; N J Saunders; D M Granoff; J C Venter; E R Moxon; G Grandi; R Rappuoli
Journal:  Science       Date:  2000-03-10       Impact factor: 47.728

10.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

  10 in total
  2 in total

1.  Automated PCR/sequence template purification.

Authors:  S C Clarke; M A Diggle
Journal:  Mol Biotechnol       Date:  2002-07       Impact factor: 2.695

2.  Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Authors:  Kavita S Kakirde; Larissa C Parsley; Mark R Liles
Journal:  Soil Biol Biochem       Date:  2010-11-01       Impact factor: 7.609

  2 in total

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