Literature DB >> 10984589

Conformation and backbone dynamics of bacteriorhodopsin revealed by (13)C-NMR.

H Saitô1, S Tuzi, S Yamaguchi, M Tanio, A Naito.   

Abstract

It is demonstrated here how the secondary structure and dynamics of transmembrane helices, as well as surface residues, such as interhelical loops and N- or C-terminus of bacteriorhodopsin (bR) in purple membrane, can be determined at ambient temperature based on very simple (13)C-NMR measurements, together with a brief experimental background. In contrast to the static picture of bR, currently available from X-ray diffraction or cryo-electron microscopy, the structure consists of dynamically heterogeneous domains which undergo various types of local fluctuations with a frequency range of 10(2)--10 (8) Hz. The significance of this picture is discussed in relation to the biological function of this protein.

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Year:  2000        PMID: 10984589     DOI: 10.1016/s0005-2728(00)00128-6

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  15 in total

1.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

Review 2.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

Review 3.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

4.  Fusogenic Alzheimer's peptide fragment Abeta (29-42) in interaction with lipid bilayers: secondary structure, dynamics, and specific interaction with phosphatidyl ethanolamine polar heads as revealed by solid-state NMR.

Authors:  Stéphanie Ravault; Olivier Soubias; Olivier Saurel; Annick Thomas; Robert Brasseur; Alain Milon
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

5.  Cell-free expressed bacteriorhodopsin in different soluble membrane mimetics: biophysical properties and NMR accessibility.

Authors:  Manuel Etzkorn; Thomas Raschle; Franz Hagn; Vladimir Gelev; Amanda J Rice; Thomas Walz; Gerhard Wagner
Journal:  Structure       Date:  2013-02-14       Impact factor: 5.006

6.  Backbone dynamics of bacteriorhodopsin as studied by (13)C solid-state NMR spectroscopy.

Authors:  Patrick Barré; Satoru Yamaguchi; Hazime Saitô; Daniel Huster
Journal:  Eur Biophys J       Date:  2003-06-26       Impact factor: 1.733

7.  Conformation and dynamics of the [3-(13)C]Ala, [1-(13)C]Val-labeled truncated pharaonis transducer, pHtrII(1-159), as revealed by site-directed (13)C solid-state NMR: changes due to association with phoborhodopsin (sensory rhodopsin II).

Authors:  Satoru Yamaguchi; Kazumi Shimono; Yuki Sudo; Satoru Tuzi; Akira Naito; Naoki Kamo; Hazime Saitô
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Significance of low-frequency local fluctuation motions in the transmembrane B and C alpha-helices of bacteriorhodopsin, to facilitate efficient proton uptake from the cytoplasmic surface, as revealed by site-directed solid-state 13C NMR.

Authors:  Atsushi Kira; Michikazu Tanio; Satoru Tuzi; Hazime Saitô
Journal:  Eur Biophys J       Date:  2004-05-05       Impact factor: 1.733

9.  Glutamic acid residues of bacteriorhodopsin at the extracellular surface as determinants for conformation and dynamics as revealed by site-directed solid-state 13C NMR.

Authors:  Hazime Saitô; Satoru Yamaguchi; Keiji Ogawa; Satoru Tuzi; Mercedes Márquez; Carolina Sanz; Esteve Padrós
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

10.  Assessing the effects of time and spatial averaging in 15N chemical shift/15N-1H dipolar correlation solid state NMR experiments.

Authors:  Suzana K Straus; Walter R P Scott; Anthony Watts
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

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