Literature DB >> 14990495

Glutamic acid residues of bacteriorhodopsin at the extracellular surface as determinants for conformation and dynamics as revealed by site-directed solid-state 13C NMR.

Hazime Saitô1, Satoru Yamaguchi, Keiji Ogawa, Satoru Tuzi, Mercedes Márquez, Carolina Sanz, Esteve Padrós.   

Abstract

We recorded (13)C NMR spectra of [3-(13)C]Ala- and [1-(13)C]Val-labeled bacteriorhodopsin (bR) and a variety of its mutants, E9Q, E74Q, E194Q/E204Q (2Glu), E9Q/E194Q/E204Q (3Glu), and E9Q/E74Q/E194Q/E204Q (4Glu), to clarify contributions of the extracellular (EC) Glu residues to the conformation and dynamics of bR. Replacement of Glu-9 or Glu-74 and Glu-194/204 at the EC surface by glutamine(s) induced significant conformational changes in the cytoplasmic (CP) surface structure. These changes occurred in the C-terminal alpha-helix and loops, and also those of the EC surface, as viewed from (13)C NMR spectra of [3-(13)C]Ala- and [1-(13)C]Val-labeled proteins. Additional conformational changes in the transmembrane alpha-helices were induced as modified retinal-protein interactions for multiple mutants involving the E194Q/E204Q pair. Significant dynamic changes were induced for the triple or quadruple mutants, as shown by broadened (13)C NMR peaks of [1-(13)C]Val-labeled proteins. These changes were due to acquired global fluctuation motions of the order of 10(-4)-10(-5) s as a result of disorganized trimeric form. In such mutants (13)C NMR signals from Val residues of [1-(13)C]Val-labeled triple and quadruple mutants near the CP and EC surfaces (including 8.7-A depth from the surface) were substantially suppressed, as shown by comparative (13)C NMR studies with and without 40 micro M Mn(2+) ion. We conclude that these Glu residues at the EC surface play an important role in maintaining the native secondary structure of bR in the purple membrane.

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Year:  2004        PMID: 14990495      PMCID: PMC1304003          DOI: 10.1016/S0006-3495(04)74236-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

1.  Fourier transform infrared evidence for early deprotonation of Asp(85) at alkaline pH in the photocycle of bacteriorhodopsin mutants containing E194Q.

Authors:  T Lazarova; C Sanz; E Querol; E Padrós
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

Review 2.  From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump.

Authors:  R A Mathies; S W Lin; J B Ames; W T Pollard
Journal:  Annu Rev Biophys Biophys Chem       Date:  1991

3.  Specific binding sites for cations in bacteriorhodopsin.

Authors:  T Eliash; L Weiner; M Ottolenghi; M Sheves
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

4.  A high-resolution solid-state 13C-NMR study on [1-13C]Ala and [3-13C]Ala and [1-13C]Leu and Val-labelled bacteriorhodopsin. Conformation and dynamics of transmembrane helices, loops and termini, and hydration-induced conformational change.

Authors:  S Tuzi; A Naito; H Saitô
Journal:  Eur J Biochem       Date:  1993-12-15

5.  Interaction of tryptophan-182 with the retinal 9-methyl group in the L intermediate of bacteriorhodopsin.

Authors:  Y Yamazaki; J Sasaki; M Hatanaka; H Kandori; A Maeda; R Needleman; T Shinada; K Yoshihara; L S Brown; J K Lanyi
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

6.  Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin.

Authors:  L S Brown; J Sasaki; H Kandori; A Maeda; R Needleman; J K Lanyi
Journal:  J Biol Chem       Date:  1995-11-10       Impact factor: 5.157

7.  Backbone dynamics of membrane proteins in lipid bilayers: the effect of two-dimensional array formation as revealed by site-directed solid-state 13C NMR studies on [3-13C]Ala- and [1-13C]Val-labeled bacteriorhodopsin.

Authors:  Hazime Saitô; Kazutoshi Yamamoto; Satoru Tuzi; Satoru Yamaguchi
Journal:  Biochim Biophys Acta       Date:  2003-10-13

8.  Titration kinetics of Asp-85 in bacteriorhodopsin: exclusion of the retinal pocket as the color-controlling cation binding site.

Authors:  X Fu; S Bressler; M Ottolenghi; T Eliash; N Friedman; M Sheves
Journal:  FEBS Lett       Date:  1997-10-20       Impact factor: 4.124

9.  Site-directed 13C solid-state NMR studies on membrane proteins: strategy and goals toward revealing conformation and dynamics as illustrated for bacteriorhodopsin labeled with [1-13C]amino acid residues.

Authors:  Hazime Saitô; Jun Mikami; Satoru Yamaguchi; Michikazu Tanio; Atushi Kira; Tadashi Arakawa; Kazutoshi Yamamoto; Satoru Tuzi
Journal:  Magn Reson Chem       Date:  2004-02       Impact factor: 2.447

10.  Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution.

Authors:  H Luecke; H T Richter; J K Lanyi
Journal:  Science       Date:  1998-06-19       Impact factor: 47.728

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  3 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Role of extracellular glutamic acids in the stability and energy landscape of bacteriorhodopsin.

Authors:  K Tanuj Sapra; Jana Doehner; V Renugopalakrishnan; Esteve Padrós; Daniel J Muller
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

3.  Conserved residues within the HIV-1 Vpu transmembrane-proximal hinge region modulate BST2 binding and antagonism.

Authors:  Sabelo Lukhele; Éric A Cohen
Journal:  Retrovirology       Date:  2017-03-14       Impact factor: 4.602

  3 in total

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