Literature DB >> 10968789

Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion.

D Lang1, R Thoma, M Henn-Sax, R Sterner, M Wilmanns.   

Abstract

The atomic structures of two proteins in the histidine biosynthesis pathway consist of beta/alpha barrels with a twofold repeat pattern. It is likely that these proteins evolved by twofold gene duplication and gene fusion from a common half-barrel ancestor. These ancestral domains are not visible as independent domains in the extant proteins but can be inferred from a combination of sequence and structural analysis. The detection of subdomain structures may be useful in efforts to search genome sequences for functionally and structurally related proteins.

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Year:  2000        PMID: 10968789     DOI: 10.1126/science.289.5484.1546

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  90 in total

1.  Subunit interactions and glutamine utilization by Escherichia coli imidazole glycerol phosphate synthase.

Authors:  T J Klem; Y Chen; V J Davisson
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Circularly permuted proteins in the protein structure database.

Authors:  J Jung; B Lee
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

3.  Mimicking natural evolution in vitro: an N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity.

Authors:  Andreas C Joerger; Sebastian Mayer; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-23       Impact factor: 11.205

4.  Accommodation of a highly symmetric core within a symmetric protein superfold.

Authors:  Stephen R Brych; Jaewon Kim; Timothy M Logan; Michael Blaber
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

5.  Structural analysis of two enzymes catalysing reverse metabolic reactions implies common ancestry.

Authors:  Olga Mayans; Andreas Ivens; L Johan Nissen; Kasper Kirschner; Matthias Wilmanns
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

6.  Crystal structure of a bifunctional aldolase-dehydrogenase: sequestering a reactive and volatile intermediate.

Authors:  Babu A Manjasetty; Justin Powlowski; Alice Vrielink
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-22       Impact factor: 11.205

Review 7.  Contribution of structural genomics to understanding the biology of Escherichia coli.

Authors:  Allan Matte; J Sivaraman; Irena Ekiel; Kalle Gehring; Zongchao Jia; Miroslaw Cygler
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

8.  Crystal structure of glutamine amidotransferase from Thermotoga maritima.

Authors:  S Korolev; T Skarina; E Evdokimova; S Beasley; A Edwards; A Joachimiak; A Savchenko
Journal:  Proteins       Date:  2002-11-15

9.  X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.

Authors:  Mayssam H Ali; Ezra Peisach; Karen N Allen; Barbara Imperiali
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

10.  Iterative approach to computational enzyme design.

Authors:  Heidi K Privett; Gert Kiss; Toni M Lee; Rebecca Blomberg; Roberto A Chica; Leonard M Thomas; Donald Hilvert; Kendall N Houk; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-22       Impact factor: 11.205

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