Literature DB >> 10933505

Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design.

P Strop1, A M Marinescu, S L Mayo.   

Abstract

Six helix surface positions of protein G (Gbeta1) were redesigned using a computational protein design algorithm, resulting in the five fold mutant Gbeta1m2. Gbeta1m2 is well folded with a circular dichroism spectrum nearly identical to that of Gbeta1, and a melting temperature of 91 degrees C, approximately 6 degrees C higher than that of Gbeta1. The crystal structure of Gbeta1m2 was solved to 2.0 A resolution by molecular replacement. The absence of hydrogen bond or salt bridge interactions between the designed residues in Gbeta1m2 suggests that the increased stability of Gbeta1m2 is due to increased helix propensity and more favorable helix dipole interactions.

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Year:  2000        PMID: 10933505      PMCID: PMC2144681          DOI: 10.1110/ps.9.7.1391

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Protein design automation.

Authors:  B I Dahiyat; S L Mayo
Journal:  Protein Sci       Date:  1996-05       Impact factor: 6.725

2.  Automated design of the surface positions of protein helices.

Authors:  B I Dahiyat; D B Gordon; S L Mayo
Journal:  Protein Sci       Date:  1997-06       Impact factor: 6.725

3.  Recombinant proteins can be isolated from E. coli cells by repeated cycles of freezing and thawing.

Authors:  B H Johnson; M H Hecht
Journal:  Biotechnology (N Y)       Date:  1994-12

4.  Helix capping propensities in peptides parallel those in proteins.

Authors:  A Chakrabartty; A J Doig; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

5.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

6.  Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.

Authors:  T Gallagher; P Alexander; P Bryan; G L Gilliland
Journal:  Biochemistry       Date:  1994-04-19       Impact factor: 3.162

7.  Measurement of the beta-sheet-forming propensities of amino acids.

Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

8.  Alpha-helix-forming propensities in peptides and proteins.

Authors:  T P Creamer; G D Rose
Journal:  Proteins       Date:  1994-06

9.  Destabilization of a protein helix by electrostatic interactions.

Authors:  S Walter; B Hubner; U Hahn; F X Schmid
Journal:  J Mol Biol       Date:  1995-09-08       Impact factor: 5.469

10.  Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

Authors:  A Chakrabartty; T Kortemme; R L Baldwin
Journal:  Protein Sci       Date:  1994-05       Impact factor: 6.725

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  4 in total

1.  Amino acid intrinsic alpha-helical propensities III: positional dependence at several positions of C terminus.

Authors:  Michael Petukhov; Koichi Uegaki; Noboru Yumoto; Luis Serrano
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

2.  Rational design of proteins that exchange on functional timescales.

Authors:  James A Davey; Adam M Damry; Natalie K Goto; Roberto A Chica
Journal:  Nat Chem Biol       Date:  2017-10-23       Impact factor: 15.040

3.  Physicochemical characterization and functional site analysis of lactoferrin gene of Vechur cow.

Authors:  Anisha Shashidharan; Ruchi Singh; Salini Bhasker; Chinnamma Mohankumar
Journal:  Bioinformation       Date:  2011-06-23

4.  Origin of conformational dynamics in a globular protein.

Authors:  Adam M Damry; Marc M Mayer; Aron Broom; Natalie K Goto; Roberto A Chica
Journal:  Commun Biol       Date:  2019-11-26
  4 in total

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