| Literature DB >> 21202681 |
Sarah M Barry, Helge Mueller-Bunz, Peter J Rutledge.
Abstract
The crystal structure of the title compound, C(6)H(16)OSi·0.5H(2)O, reveals an asymmetric unit containing two mol-ecules of the silanol and a single water mol-ecule. There is evidence of hydrogen bonding between the three mol-ecules in the asymmetric unit. The H atoms of the silanol OH groups and the water H atoms are each disordered equally over two positions.Entities:
Year: 2008 PMID: 21202681 PMCID: PMC2961358 DOI: 10.1107/S1600536808015444
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H16OSi·0.5H2O | |
| Monoclinic, | Mo |
| Cell parameters from 5333 reflections | |
| θ = 2.6–29.4º | |
| µ = 0.19 mm−1 | |
| β = 90.307 (4)º | |
| Block, colourless | |
| 1.00 × 1.00 × 0.80 mm |
| Bruker SMART APEX detector diffractometer | 4093 independent reflections |
| Radiation source: fine-focus sealed tube | 3529 reflections with |
| Monochromator: graphite | |
| θmax = 27.0º | |
| φ and ω scans | θmin = 0.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2000) | |
| 15971 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.040 | |
| 4093 reflections | Δρmax = 0.55 e Å−3 |
| 181 parameters | Δρmin = −0.49 e Å−3 |
| 6 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Si1 | 0.08637 (10) | 0.59717 (3) | 1.24126 (7) | 0.01975 (18) | |
| O1 | 0.0393 (3) | 0.56062 (9) | 1.1151 (2) | 0.0313 (5) | |
| H1O1 | −0.0509 | 0.5399 | 1.1251 | 0.047* | 0.50 |
| H2O1 | 0.1314 | 0.5488 | 1.0825 | 0.047* | 0.50 |
| C1 | 0.0225 (5) | 0.55098 (15) | 1.3734 (3) | 0.0408 (8) | |
| H1A | −0.1001 | 0.5398 | 1.3660 | 0.061* | |
| H1B | 0.0400 | 0.5744 | 1.4477 | 0.061* | |
| H1C | 0.0937 | 0.5143 | 1.3766 | 0.061* | |
| C2 | 0.3243 (4) | 0.60908 (15) | 1.2437 (3) | 0.0350 (7) | |
| H2A | 0.3834 | 0.5699 | 1.2401 | 0.052* | |
| H2B | 0.3575 | 0.6301 | 1.3184 | 0.052* | |
| H2C | 0.3580 | 0.6336 | 1.1738 | 0.052* | |
| C3 | −0.0367 (4) | 0.67096 (12) | 1.2379 (2) | 0.0227 (5) | |
| C4 | −0.0021 (5) | 0.70679 (15) | 1.3542 (3) | 0.0385 (8) | |
| H4A | 0.1224 | 0.7151 | 1.3616 | 0.058* | |
| H4B | −0.0405 | 0.6831 | 1.4240 | 0.058* | |
| H4C | −0.0661 | 0.7451 | 1.3512 | 0.058* | |
| C5 | 0.0191 (6) | 0.70852 (15) | 1.1297 (3) | 0.0471 (10) | |
| H5A | −0.0453 | 0.7467 | 1.1288 | 0.071* | |
| H5B | −0.0051 | 0.6861 | 1.0550 | 0.071* | |
| H5C | 0.1437 | 0.7169 | 1.1355 | 0.071* | |
| C6 | −0.2315 (4) | 0.65768 (16) | 1.2285 (3) | 0.0425 (8) | |
| H6A | −0.2677 | 0.6336 | 1.2984 | 0.064* | |
| H6B | −0.2553 | 0.6351 | 1.1541 | 0.064* | |
| H6C | −0.2961 | 0.6958 | 1.2271 | 0.064* | |
| Si2 | 0.41635 (10) | 0.62186 (3) | 0.80713 (7) | 0.02124 (19) | |
| O2 | 0.4716 (3) | 0.56071 (10) | 0.8832 (2) | 0.0345 (5) | |
| H1O2 | 0.5780 | 0.5619 | 0.8996 | 0.052* | 0.50 |
| H2O2 | 0.3931 | 0.5346 | 0.8761 | 0.052* | 0.50 |
| C7 | 0.4726 (5) | 0.68968 (15) | 0.8981 (3) | 0.0402 (8) | |
| H7A | 0.3994 | 0.6911 | 0.9703 | 0.060* | |
| H7B | 0.4531 | 0.7261 | 0.8496 | 0.060* | |
| H7C | 0.5948 | 0.6876 | 0.9225 | 0.060* | |
| C8 | 0.1783 (4) | 0.61756 (15) | 0.7803 (3) | 0.0381 (8) | |
| H8A | 0.1509 | 0.5805 | 0.7356 | 0.057* | |
| H8B | 0.1407 | 0.6528 | 0.7332 | 0.057* | |
| H8C | 0.1179 | 0.6172 | 0.8581 | 0.057* | |
| C9 | 0.5397 (4) | 0.62185 (11) | 0.6618 (2) | 0.0226 (6) | |
| C10 | 0.4979 (5) | 0.56497 (14) | 0.5889 (3) | 0.0379 (8) | |
| H10A | 0.5657 | 0.5650 | 0.5142 | 0.057* | |
| H10B | 0.3739 | 0.5643 | 0.5690 | 0.057* | |
| H10C | 0.5274 | 0.5291 | 0.6369 | 0.057* | |
| C11 | 0.7347 (4) | 0.62329 (15) | 0.6898 (3) | 0.0375 (8) | |
| H11A | 0.7654 | 0.5886 | 0.7407 | 0.056* | |
| H11B | 0.7634 | 0.6608 | 0.7325 | 0.056* | |
| H11C | 0.7998 | 0.6214 | 0.6140 | 0.056* | |
| C12 | 0.4920 (5) | 0.67741 (14) | 0.5854 (3) | 0.0364 (7) | |
| H12A | 0.5209 | 0.7143 | 0.6303 | 0.055* | |
| H12B | 0.3673 | 0.6769 | 0.5674 | 0.055* | |
| H12C | 0.5572 | 0.6766 | 0.5096 | 0.055* | |
| O3 | 0.2501 (2) | 0.48396 (9) | 0.99424 (19) | 0.0261 (4) | |
| H1O3 | 0.190 (7) | 0.503 (2) | 1.043 (5) | 0.039* | 0.50 |
| H2O3 | 0.316 (7) | 0.506 (2) | 0.956 (5) | 0.039* | 0.50 |
| H3O3 | 0.327 (6) | 0.464 (2) | 1.026 (6) | 0.039* | 0.50 |
| H4O3 | 0.172 (6) | 0.464 (2) | 0.963 (6) | 0.039* | 0.50 |
| Si1 | 0.0189 (3) | 0.0196 (3) | 0.0207 (3) | −0.0005 (3) | −0.0001 (3) | 0.0000 (3) |
| O1 | 0.0248 (11) | 0.0336 (12) | 0.0354 (11) | −0.0016 (8) | 0.0018 (9) | −0.0151 (9) |
| C1 | 0.050 (2) | 0.0316 (17) | 0.0408 (18) | 0.0045 (14) | 0.0121 (16) | 0.0115 (14) |
| C2 | 0.0251 (16) | 0.0441 (18) | 0.0357 (17) | 0.0006 (13) | −0.0040 (13) | −0.0035 (14) |
| C3 | 0.0275 (14) | 0.0209 (13) | 0.0198 (12) | −0.0004 (10) | 0.0043 (10) | −0.0001 (10) |
| C4 | 0.055 (2) | 0.0293 (16) | 0.0317 (16) | −0.0003 (14) | 0.0047 (15) | −0.0066 (13) |
| C5 | 0.077 (3) | 0.0299 (17) | 0.0342 (17) | 0.0152 (17) | 0.0179 (18) | 0.0108 (14) |
| C6 | 0.0287 (17) | 0.0419 (18) | 0.057 (2) | 0.0116 (14) | −0.0020 (15) | −0.0126 (16) |
| Si2 | 0.0187 (4) | 0.0208 (3) | 0.0242 (4) | −0.0002 (3) | −0.0008 (3) | 0.0022 (3) |
| O2 | 0.0254 (11) | 0.0366 (12) | 0.0415 (12) | 0.0014 (9) | 0.0020 (10) | 0.0170 (10) |
| C7 | 0.053 (2) | 0.0360 (17) | 0.0315 (16) | −0.0072 (15) | 0.0082 (15) | −0.0135 (14) |
| C8 | 0.0212 (15) | 0.0394 (18) | 0.054 (2) | 0.0025 (12) | −0.0009 (14) | 0.0073 (15) |
| C9 | 0.0282 (14) | 0.0184 (12) | 0.0211 (13) | 0.0008 (10) | 0.0008 (11) | −0.0017 (10) |
| C10 | 0.053 (2) | 0.0259 (16) | 0.0349 (17) | 0.0045 (14) | −0.0021 (15) | −0.0099 (13) |
| C11 | 0.0272 (16) | 0.0475 (19) | 0.0379 (17) | −0.0007 (13) | 0.0123 (14) | 0.0009 (14) |
| C12 | 0.055 (2) | 0.0263 (15) | 0.0279 (15) | 0.0023 (14) | 0.0011 (15) | 0.0053 (12) |
| O3 | 0.0188 (11) | 0.0259 (10) | 0.0334 (11) | 0.0004 (8) | −0.0024 (9) | −0.0003 (9) |
| Si1—O1 | 1.651 (2) | Si2—C8 | 1.859 (3) |
| Si1—C1 | 1.852 (3) | Si2—C9 | 1.871 (3) |
| Si1—C2 | 1.853 (3) | O2—H1O2 | 0.8400 |
| Si1—C3 | 1.888 (3) | O2—H2O2 | 0.8400 |
| O1—H1O1 | 0.8400 | C7—H7A | 0.9800 |
| O1—H2O1 | 0.8400 | C7—H7B | 0.9800 |
| C1—H1A | 0.9800 | C7—H7C | 0.9800 |
| C1—H1B | 0.9800 | C8—H8A | 0.9800 |
| C1—H1C | 0.9800 | C8—H8B | 0.9800 |
| C2—H2A | 0.9800 | C8—H8C | 0.9800 |
| C2—H2B | 0.9800 | C9—C10 | 1.528 (4) |
| C2—H2C | 0.9800 | C9—C11 | 1.533 (4) |
| C3—C5 | 1.521 (4) | C9—C12 | 1.535 (4) |
| C3—C4 | 1.532 (4) | C10—H10A | 0.9800 |
| C3—C6 | 1.533 (4) | C10—H10B | 0.9800 |
| C4—H4A | 0.9800 | C10—H10C | 0.9800 |
| C4—H4B | 0.9800 | C11—H11A | 0.9800 |
| C4—H4C | 0.9800 | C11—H11B | 0.9800 |
| C5—H5A | 0.9800 | C11—H11C | 0.9800 |
| C5—H5B | 0.9800 | C12—H12A | 0.9800 |
| C5—H5C | 0.9800 | C12—H12B | 0.9800 |
| C6—H6A | 0.9800 | C12—H12C | 0.9800 |
| C6—H6B | 0.9800 | O3—H1O3 | 0.824 (19) |
| C6—H6C | 0.9800 | O3—H2O3 | 0.82 (2) |
| Si2—O2 | 1.648 (2) | O3—H3O3 | 0.822 (19) |
| Si2—C7 | 1.856 (3) | O3—H4O3 | 0.815 (19) |
| O1—Si1—C1 | 109.79 (15) | O2—Si2—C9 | 107.90 (12) |
| O1—Si1—C2 | 107.15 (13) | C7—Si2—C9 | 110.33 (14) |
| C1—Si1—C2 | 109.53 (17) | C8—Si2—C9 | 111.62 (16) |
| O1—Si1—C3 | 107.38 (12) | Si2—O2—H1O2 | 109.5 |
| C1—Si1—C3 | 110.88 (14) | Si2—O2—H2O2 | 109.5 |
| C2—Si1—C3 | 112.00 (14) | Si2—C7—H7A | 109.5 |
| Si1—O1—H1O1 | 109.5 | Si2—C7—H7B | 109.5 |
| Si1—O1—H2O1 | 109.5 | H7A—C7—H7B | 109.5 |
| Si1—C1—H1A | 109.5 | Si2—C7—H7C | 109.5 |
| Si1—C1—H1B | 109.5 | H7A—C7—H7C | 109.5 |
| H1A—C1—H1B | 109.5 | H7B—C7—H7C | 109.5 |
| Si1—C1—H1C | 109.5 | Si2—C8—H8A | 109.5 |
| H1A—C1—H1C | 109.5 | Si2—C8—H8B | 109.5 |
| H1B—C1—H1C | 109.5 | H8A—C8—H8B | 109.5 |
| Si1—C2—H2A | 109.5 | Si2—C8—H8C | 109.5 |
| Si1—C2—H2B | 109.5 | H8A—C8—H8C | 109.5 |
| H2A—C2—H2B | 109.5 | H8B—C8—H8C | 109.5 |
| Si1—C2—H2C | 109.5 | C10—C9—C11 | 109.1 (3) |
| H2A—C2—H2C | 109.5 | C10—C9—C12 | 108.6 (3) |
| H2B—C2—H2C | 109.5 | C11—C9—C12 | 109.0 (3) |
| C5—C3—C4 | 109.2 (2) | C10—C9—Si2 | 110.3 (2) |
| C5—C3—C6 | 109.4 (3) | C11—C9—Si2 | 109.2 (2) |
| C4—C3—C6 | 108.8 (3) | C12—C9—Si2 | 110.6 (2) |
| C5—C3—Si1 | 110.1 (2) | C9—C10—H10A | 109.5 |
| C4—C3—Si1 | 110.2 (2) | C9—C10—H10B | 109.5 |
| C6—C3—Si1 | 109.13 (19) | H10A—C10—H10B | 109.5 |
| C3—C4—H4A | 109.5 | C9—C10—H10C | 109.5 |
| C3—C4—H4B | 109.5 | H10A—C10—H10C | 109.5 |
| H4A—C4—H4B | 109.5 | H10B—C10—H10C | 109.5 |
| C3—C4—H4C | 109.5 | C9—C11—H11A | 109.5 |
| H4A—C4—H4C | 109.5 | C9—C11—H11B | 109.5 |
| H4B—C4—H4C | 109.5 | H11A—C11—H11B | 109.5 |
| C3—C5—H5A | 109.5 | C9—C11—H11C | 109.5 |
| C3—C5—H5B | 109.5 | H11A—C11—H11C | 109.5 |
| H5A—C5—H5B | 109.5 | H11B—C11—H11C | 109.5 |
| C3—C5—H5C | 109.5 | C9—C12—H12A | 109.5 |
| H5A—C5—H5C | 109.5 | C9—C12—H12B | 109.5 |
| H5B—C5—H5C | 109.5 | H12A—C12—H12B | 109.5 |
| C3—C6—H6A | 109.5 | C9—C12—H12C | 109.5 |
| C3—C6—H6B | 109.5 | H12A—C12—H12C | 109.5 |
| H6A—C6—H6B | 109.5 | H12B—C12—H12C | 109.5 |
| C3—C6—H6C | 109.5 | H1O3—O3—H2O3 | 113 (4) |
| H6A—C6—H6C | 109.5 | H1O3—O3—H3O3 | 113 (7) |
| H6B—C6—H6C | 109.5 | H2O3—O3—H3O3 | 95 (6) |
| O2—Si2—C7 | 109.13 (16) | H1O3—O3—H4O3 | 98 (7) |
| O2—Si2—C8 | 106.94 (13) | H2O3—O3—H4O3 | 123 (7) |
| C7—Si2—C8 | 110.79 (16) | H3O3—O3—H4O3 | 115 (4) |
| O1—Si1—C3—C5 | −60.8 (2) | O2—Si2—C9—C10 | 59.0 (2) |
| C1—Si1—C3—C5 | 179.3 (2) | C7—Si2—C9—C10 | 178.1 (2) |
| C2—Si1—C3—C5 | 56.6 (3) | C8—Si2—C9—C10 | −58.3 (2) |
| O1—Si1—C3—C4 | 178.8 (2) | O2—Si2—C9—C11 | −60.9 (2) |
| C1—Si1—C3—C4 | 58.8 (3) | C7—Si2—C9—C11 | 58.3 (2) |
| C2—Si1—C3—C4 | −63.9 (2) | C8—Si2—C9—C11 | −178.1 (2) |
| O1—Si1—C3—C6 | 59.4 (2) | O2—Si2—C9—C12 | 179.1 (2) |
| C1—Si1—C3—C6 | −60.6 (3) | C7—Si2—C9—C12 | −61.7 (3) |
| C2—Si1—C3—C6 | 176.7 (2) | C8—Si2—C9—C12 | 61.9 (2) |
| H··· | ||||
| O1—H1O1···O3i | 0.84 | 2.09 | 2.717 (3) | 131 |
| O1—H2O1···O3 | 0.84 | 1.96 | 2.706 (3) | 147 |
| O2—H1O2···O3ii | 0.84 | 2.04 | 2.718 (3) | 138 |
| O2—H2O2···O3 | 0.84 | 2.05 | 2.707 (3) | 135 |
| O3—H1O3···O1 | 0.824 (19) | 1.91 (3) | 2.706 (3) | 163 (6) |
| O3—H4O3···O1i | 0.815 (19) | 1.92 (2) | 2.717 (3) | 164 (6) |
| O3—H2O3···O2 | 0.82 (2) | 1.89 (2) | 2.707 (3) | 173 (6) |
| O3—H3O3···O2ii | 0.822 (19) | 1.92 (2) | 2.718 (3) | 164 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 | 2.09 | 2.717 (3) | 131 |
| O1—H2 | 0.84 | 1.96 | 2.706 (3) | 147 |
| O2—H1 | 0.84 | 2.04 | 2.718 (3) | 138 |
| O2—H2 | 0.84 | 2.05 | 2.707 (3) | 135 |
| O3—H1 | 0.824 (19) | 1.91 (3) | 2.706 (3) | 163 (6) |
| O3—H4 | 0.815 (19) | 1.92 (2) | 2.717 (3) | 164 (6) |
| O3—H2 | 0.82 (2) | 1.89 (2) | 2.707 (3) | 173 (6) |
| O3—H3 | 0.822 (19) | 1.92 (2) | 2.718 (3) | 164 (6) |
Symmetry codes: (i) ; (ii) .