Literature DB >> 21202681

tert-Butyl-dimethyl-silanol hemihydrate.

Sarah M Barry, Helge Mueller-Bunz, Peter J Rutledge.   

Abstract

The crystal structure of the title compound, C(6)H(16)OSi·0.5H(2)O, reveals an asymmetric unit containing two mol-ecules of the silanol and a single water mol-ecule. There is evidence of hydrogen bonding between the three mol-ecules in the asymmetric unit. The H atoms of the silanol OH groups and the water H atoms are each disordered equally over two positions.

Entities:  

Year:  2008        PMID: 21202681      PMCID: PMC2961358          DOI: 10.1107/S1600536808015444

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Krall et al. (2005 ▶); Lickiss et al. (1995 ▶); Mansfeld, Schürmann & Mehring (2005 ▶); Mansfeld, Mehring & Schürmann (2005 ▶); McGeary et al. (1991 ▶); Veith et al. (2006 ▶); Barry & Rutledge (2008 ▶); Görbitz (1999 ▶).

Experimental

Crystal data

C6H16OSi·0.5H2O M = 141.29 Monoclinic, a = 7.7078 (18) Å b = 22.119 (5) Å c = 11.058 (3) Å β = 90.307 (4)° V = 1885.2 (8) Å3 Z = 8 Mo Kα radiation μ = 0.19 mm−1 T = 100 (2) K 1.00 × 1.00 × 0.80 mm

Data collection

Bruker SMART APEX detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.519, T max = 0.865 15971 measured reflections 4093 independent reflections 3529 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.149 S = 1.05 4093 reflections 181 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.49 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808015444/kj2088sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015444/kj2088Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H16OSi·0.5H2OF000 = 632
Mr = 141.29Dx = 0.996 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
a = 7.7078 (18) ÅCell parameters from 5333 reflections
b = 22.119 (5) Åθ = 2.6–29.4º
c = 11.058 (3) ŵ = 0.19 mm1
β = 90.307 (4)ºT = 100 (2) K
V = 1885.2 (8) Å3Block, colourless
Z = 81.00 × 1.00 × 0.80 mm
Bruker SMART APEX detector diffractometer4093 independent reflections
Radiation source: fine-focus sealed tube3529 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.054
T = 100(2) Kθmax = 27.0º
φ and ω scansθmin = 0.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 2000)h = −9→9
Tmin = 0.519, Tmax = 0.865k = −28→28
15971 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.149  w = 1/[σ2(Fo2) + (0.0859P)2 + 1.0972P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.040
4093 reflectionsΔρmax = 0.55 e Å3
181 parametersΔρmin = −0.49 e Å3
6 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Si10.08637 (10)0.59717 (3)1.24126 (7)0.01975 (18)
O10.0393 (3)0.56062 (9)1.1151 (2)0.0313 (5)
H1O1−0.05090.53991.12510.047*0.50
H2O10.13140.54881.08250.047*0.50
C10.0225 (5)0.55098 (15)1.3734 (3)0.0408 (8)
H1A−0.10010.53981.36600.061*
H1B0.04000.57441.44770.061*
H1C0.09370.51431.37660.061*
C20.3243 (4)0.60908 (15)1.2437 (3)0.0350 (7)
H2A0.38340.56991.24010.052*
H2B0.35750.63011.31840.052*
H2C0.35800.63361.17380.052*
C3−0.0367 (4)0.67096 (12)1.2379 (2)0.0227 (5)
C4−0.0021 (5)0.70679 (15)1.3542 (3)0.0385 (8)
H4A0.12240.71511.36160.058*
H4B−0.04050.68311.42400.058*
H4C−0.06610.74511.35120.058*
C50.0191 (6)0.70852 (15)1.1297 (3)0.0471 (10)
H5A−0.04530.74671.12880.071*
H5B−0.00510.68611.05500.071*
H5C0.14370.71691.13550.071*
C6−0.2315 (4)0.65768 (16)1.2285 (3)0.0425 (8)
H6A−0.26770.63361.29840.064*
H6B−0.25530.63511.15410.064*
H6C−0.29610.69581.22710.064*
Si20.41635 (10)0.62186 (3)0.80713 (7)0.02124 (19)
O20.4716 (3)0.56071 (10)0.8832 (2)0.0345 (5)
H1O20.57800.56190.89960.052*0.50
H2O20.39310.53460.87610.052*0.50
C70.4726 (5)0.68968 (15)0.8981 (3)0.0402 (8)
H7A0.39940.69110.97030.060*
H7B0.45310.72610.84960.060*
H7C0.59480.68760.92250.060*
C80.1783 (4)0.61756 (15)0.7803 (3)0.0381 (8)
H8A0.15090.58050.73560.057*
H8B0.14070.65280.73320.057*
H8C0.11790.61720.85810.057*
C90.5397 (4)0.62185 (11)0.6618 (2)0.0226 (6)
C100.4979 (5)0.56497 (14)0.5889 (3)0.0379 (8)
H10A0.56570.56500.51420.057*
H10B0.37390.56430.56900.057*
H10C0.52740.52910.63690.057*
C110.7347 (4)0.62329 (15)0.6898 (3)0.0375 (8)
H11A0.76540.58860.74070.056*
H11B0.76340.66080.73250.056*
H11C0.79980.62140.61400.056*
C120.4920 (5)0.67741 (14)0.5854 (3)0.0364 (7)
H12A0.52090.71430.63030.055*
H12B0.36730.67690.56740.055*
H12C0.55720.67660.50960.055*
O30.2501 (2)0.48396 (9)0.99424 (19)0.0261 (4)
H1O30.190 (7)0.503 (2)1.043 (5)0.039*0.50
H2O30.316 (7)0.506 (2)0.956 (5)0.039*0.50
H3O30.327 (6)0.464 (2)1.026 (6)0.039*0.50
H4O30.172 (6)0.464 (2)0.963 (6)0.039*0.50
U11U22U33U12U13U23
Si10.0189 (3)0.0196 (3)0.0207 (3)−0.0005 (3)−0.0001 (3)0.0000 (3)
O10.0248 (11)0.0336 (12)0.0354 (11)−0.0016 (8)0.0018 (9)−0.0151 (9)
C10.050 (2)0.0316 (17)0.0408 (18)0.0045 (14)0.0121 (16)0.0115 (14)
C20.0251 (16)0.0441 (18)0.0357 (17)0.0006 (13)−0.0040 (13)−0.0035 (14)
C30.0275 (14)0.0209 (13)0.0198 (12)−0.0004 (10)0.0043 (10)−0.0001 (10)
C40.055 (2)0.0293 (16)0.0317 (16)−0.0003 (14)0.0047 (15)−0.0066 (13)
C50.077 (3)0.0299 (17)0.0342 (17)0.0152 (17)0.0179 (18)0.0108 (14)
C60.0287 (17)0.0419 (18)0.057 (2)0.0116 (14)−0.0020 (15)−0.0126 (16)
Si20.0187 (4)0.0208 (3)0.0242 (4)−0.0002 (3)−0.0008 (3)0.0022 (3)
O20.0254 (11)0.0366 (12)0.0415 (12)0.0014 (9)0.0020 (10)0.0170 (10)
C70.053 (2)0.0360 (17)0.0315 (16)−0.0072 (15)0.0082 (15)−0.0135 (14)
C80.0212 (15)0.0394 (18)0.054 (2)0.0025 (12)−0.0009 (14)0.0073 (15)
C90.0282 (14)0.0184 (12)0.0211 (13)0.0008 (10)0.0008 (11)−0.0017 (10)
C100.053 (2)0.0259 (16)0.0349 (17)0.0045 (14)−0.0021 (15)−0.0099 (13)
C110.0272 (16)0.0475 (19)0.0379 (17)−0.0007 (13)0.0123 (14)0.0009 (14)
C120.055 (2)0.0263 (15)0.0279 (15)0.0023 (14)0.0011 (15)0.0053 (12)
O30.0188 (11)0.0259 (10)0.0334 (11)0.0004 (8)−0.0024 (9)−0.0003 (9)
Si1—O11.651 (2)Si2—C81.859 (3)
Si1—C11.852 (3)Si2—C91.871 (3)
Si1—C21.853 (3)O2—H1O20.8400
Si1—C31.888 (3)O2—H2O20.8400
O1—H1O10.8400C7—H7A0.9800
O1—H2O10.8400C7—H7B0.9800
C1—H1A0.9800C7—H7C0.9800
C1—H1B0.9800C8—H8A0.9800
C1—H1C0.9800C8—H8B0.9800
C2—H2A0.9800C8—H8C0.9800
C2—H2B0.9800C9—C101.528 (4)
C2—H2C0.9800C9—C111.533 (4)
C3—C51.521 (4)C9—C121.535 (4)
C3—C41.532 (4)C10—H10A0.9800
C3—C61.533 (4)C10—H10B0.9800
C4—H4A0.9800C10—H10C0.9800
C4—H4B0.9800C11—H11A0.9800
C4—H4C0.9800C11—H11B0.9800
C5—H5A0.9800C11—H11C0.9800
C5—H5B0.9800C12—H12A0.9800
C5—H5C0.9800C12—H12B0.9800
C6—H6A0.9800C12—H12C0.9800
C6—H6B0.9800O3—H1O30.824 (19)
C6—H6C0.9800O3—H2O30.82 (2)
Si2—O21.648 (2)O3—H3O30.822 (19)
Si2—C71.856 (3)O3—H4O30.815 (19)
O1—Si1—C1109.79 (15)O2—Si2—C9107.90 (12)
O1—Si1—C2107.15 (13)C7—Si2—C9110.33 (14)
C1—Si1—C2109.53 (17)C8—Si2—C9111.62 (16)
O1—Si1—C3107.38 (12)Si2—O2—H1O2109.5
C1—Si1—C3110.88 (14)Si2—O2—H2O2109.5
C2—Si1—C3112.00 (14)Si2—C7—H7A109.5
Si1—O1—H1O1109.5Si2—C7—H7B109.5
Si1—O1—H2O1109.5H7A—C7—H7B109.5
Si1—C1—H1A109.5Si2—C7—H7C109.5
Si1—C1—H1B109.5H7A—C7—H7C109.5
H1A—C1—H1B109.5H7B—C7—H7C109.5
Si1—C1—H1C109.5Si2—C8—H8A109.5
H1A—C1—H1C109.5Si2—C8—H8B109.5
H1B—C1—H1C109.5H8A—C8—H8B109.5
Si1—C2—H2A109.5Si2—C8—H8C109.5
Si1—C2—H2B109.5H8A—C8—H8C109.5
H2A—C2—H2B109.5H8B—C8—H8C109.5
Si1—C2—H2C109.5C10—C9—C11109.1 (3)
H2A—C2—H2C109.5C10—C9—C12108.6 (3)
H2B—C2—H2C109.5C11—C9—C12109.0 (3)
C5—C3—C4109.2 (2)C10—C9—Si2110.3 (2)
C5—C3—C6109.4 (3)C11—C9—Si2109.2 (2)
C4—C3—C6108.8 (3)C12—C9—Si2110.6 (2)
C5—C3—Si1110.1 (2)C9—C10—H10A109.5
C4—C3—Si1110.2 (2)C9—C10—H10B109.5
C6—C3—Si1109.13 (19)H10A—C10—H10B109.5
C3—C4—H4A109.5C9—C10—H10C109.5
C3—C4—H4B109.5H10A—C10—H10C109.5
H4A—C4—H4B109.5H10B—C10—H10C109.5
C3—C4—H4C109.5C9—C11—H11A109.5
H4A—C4—H4C109.5C9—C11—H11B109.5
H4B—C4—H4C109.5H11A—C11—H11B109.5
C3—C5—H5A109.5C9—C11—H11C109.5
C3—C5—H5B109.5H11A—C11—H11C109.5
H5A—C5—H5B109.5H11B—C11—H11C109.5
C3—C5—H5C109.5C9—C12—H12A109.5
H5A—C5—H5C109.5C9—C12—H12B109.5
H5B—C5—H5C109.5H12A—C12—H12B109.5
C3—C6—H6A109.5C9—C12—H12C109.5
C3—C6—H6B109.5H12A—C12—H12C109.5
H6A—C6—H6B109.5H12B—C12—H12C109.5
C3—C6—H6C109.5H1O3—O3—H2O3113 (4)
H6A—C6—H6C109.5H1O3—O3—H3O3113 (7)
H6B—C6—H6C109.5H2O3—O3—H3O395 (6)
O2—Si2—C7109.13 (16)H1O3—O3—H4O398 (7)
O2—Si2—C8106.94 (13)H2O3—O3—H4O3123 (7)
C7—Si2—C8110.79 (16)H3O3—O3—H4O3115 (4)
O1—Si1—C3—C5−60.8 (2)O2—Si2—C9—C1059.0 (2)
C1—Si1—C3—C5179.3 (2)C7—Si2—C9—C10178.1 (2)
C2—Si1—C3—C556.6 (3)C8—Si2—C9—C10−58.3 (2)
O1—Si1—C3—C4178.8 (2)O2—Si2—C9—C11−60.9 (2)
C1—Si1—C3—C458.8 (3)C7—Si2—C9—C1158.3 (2)
C2—Si1—C3—C4−63.9 (2)C8—Si2—C9—C11−178.1 (2)
O1—Si1—C3—C659.4 (2)O2—Si2—C9—C12179.1 (2)
C1—Si1—C3—C6−60.6 (3)C7—Si2—C9—C12−61.7 (3)
C2—Si1—C3—C6176.7 (2)C8—Si2—C9—C1261.9 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O3i0.842.092.717 (3)131
O1—H2O1···O30.841.962.706 (3)147
O2—H1O2···O3ii0.842.042.718 (3)138
O2—H2O2···O30.842.052.707 (3)135
O3—H1O3···O10.824 (19)1.91 (3)2.706 (3)163 (6)
O3—H4O3···O1i0.815 (19)1.92 (2)2.717 (3)164 (6)
O3—H2O3···O20.82 (2)1.89 (2)2.707 (3)173 (6)
O3—H3O3···O2ii0.822 (19)1.92 (2)2.718 (3)164 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O3i0.842.092.717 (3)131
O1—H2O1⋯O30.841.962.706 (3)147
O2—H1O2⋯O3ii0.842.042.718 (3)138
O2—H2O2⋯O30.842.052.707 (3)135
O3—H1O3⋯O10.824 (19)1.91 (3)2.706 (3)163 (6)
O3—H4O3⋯O1i0.815 (19)1.92 (2)2.717 (3)164 (6)
O3—H2O3⋯O20.82 (2)1.89 (2)2.707 (3)173 (6)
O3—H3O3⋯O2ii0.822 (19)1.92 (2)2.718 (3)164 (6)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  From a monomeric bismuth silanolate to a molecular bismuth oxo cluster: [Bi22O26(OSiMe2tBu)14].

Authors:  Dirk Mansfeld; Michael Mehring; Markus Schürmann
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-27       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  What is the best crystal size for collection of X-ray data? Refinement of the structure of glycyl-L-serine based on data from a very large crystal.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01
  3 in total

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